Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00034 ATGAGCTGTTTTTCTTGTCTTTTTTCTGGTCGGAAAGATGTCAGCAGAGTCGAAGTTGATAATGAGGGTGAAAGGAAGAAAGAATGCTCGGAGTCAGGGAGCAGTAGCAAAAGCAATAATAAGGCAGCAGCTAGTTTTGGTTTTCGAGAGCTTGCAGAGGCAACAAAGGGTTTTAAGGAAGTGAACTTGATTGGGGAAGGTGGTTTTGGAAGGGTTTATAAGGGTCGTCTCCCAACAGGCGAGGTTGTTGCCATAAAACAATTAAGTCATGATGGTCATCAAGGTTTTCAGGAATTTGTTATGGAGGTTCTTATGTTAAGCCTGCACCATCATTCTAATCTTGTTAAGTTAATTGGATACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATATATGCCTATGGGTTCCCTGGAAGATCATCTTTTCGATCTTAACCAAGACAAAGAACCCCTAAGTTGGAGTGTTCGAATGAAGATTGCTGTTGGAACTGCTCGGGGCCTTGAGTATCTCCACTGTAAAACAGATCCTCCTGTTATCTATAGAGACTTGAAATCTGCGAACATCTTATTAGACAGCGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCGCCAGAGTATGCCATGAGTGGCAAATTAACTCTCAAGTCTGATATCTACAGCTTTGGTGTGGTTTTGCTGGAGTTGATCACTGGACGTAGGGCAATAGATGCTGGTAAAAGACCAGGAGAGCAAAACTTAGTTTCCTGGTCTCGCCCATTTATAAGTGACCGGAGAAAGTTTGTACAAATGGTTGACCCTCTTTTGCAAGGACACTTCCCCATGCGCTGCTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAGTTCCGTCCACTTATTGGTGATATTGTTGTTGCACTGGAGTACTTAGCTTCTCAGAGTATCTCTGAAGTCCATAGACATGGTGTGCCCCGCCCACAACTGCAACCACCTCAAGAAATAGACAGAGATTAA 1086 0.4337 MSCFSCLFSGRKDVSRVEVDNEGERKKECSESGSSSKSNNKAAASFGFRELAEATKGFKEVNLIGEGGFGRVYKGRLPTGEVVAIKQLSHDGHQGFQEFVMEVLMLSLHHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLNQDKEPLSWSVRMKIAVGTARGLEYLHCKTDPPVIYRDLKSANILLDSEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDAGKRPGEQNLVSWSRPFISDRRKFVQMVDPLLQGHFPMRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSISEVHRHGVPRPQLQPPQEIDRD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00034 361 ProSitePatterns Protein kinases ATP-binding region signature. 64 86 IPR017441 GO:0005524
Gabi3280g00034 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Gabi3280g00034 361 PIRSF ILK 6 347 - -
Gabi3280g00034 361 FunFam Serine/threonine-protein kinase PBS1 134 347 - -
Gabi3280g00034 361 Gene3D Transferase(Phosphotransferase) domain 1 134 347 - -
Gabi3280g00034 361 ProSiteProfiles Protein kinase domain profile. 58 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00034 361 FunFam probable serine/threonine-protein kinase RLCKVII 30 133 - -
Gabi3280g00034 361 SMART serkin_6 58 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00034 361 CDD STKc_IRAK 64 332 - -
Gabi3280g00034 361 PANTHER OS07G0668900 PROTEIN 26 340 - -
Gabi3280g00034 361 Gene3D Phosphorylase Kinase; domain 1 18 133 - -
Gabi3280g00034 361 SUPERFAMILY Protein kinase-like (PK-like) 40 332 IPR011009 -
Gabi3280g00034 361 Pfam Protein kinase domain 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00034 Gabi-Chr3280 224882 229997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00034 1 350 Glycoside Hydrolase AT3G07070 57.447 4.58e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi3280g00034 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00034 - - gmx:100796595 563.918