Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00033 ATGAGCTGTTTTTCTTGTCTTTTTTCTGGTCGGAAAGATGTCAGCAGAGTCGAAGTTGATAATGGCTCTCGATCTACTACTACTTCTACAGAGGGTGAAAGGAAGAAAGAATGCTCGGAGTCAGGGAGCAGTAGCAAAAGCAATAATAAGGCAGCAGCTAGTTTTGGTTTTCGAGAGCTTGCAGAGGCAACAAAGGGTTTTAAGGAAGTGAACTTGATTGGGGAAGGTGGTTTTGGAAGGGTTTATAAGGGTCGTCTCCCAACAGGCGAGGTTGTTGCCATAAAACAATTAAGTCATGATGGTCATCAAGGTTTTCAGGAATTTGTTATGGAGGTTCTTATGTTAAGCCTGCACCATCATTCTAATCTTGTTAAGTTAATTGGATACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATATATGCCTATGGGTTCCCTGGAAGATCATCTTTTCGATCTTAACCAAGACAAAGAACCCCTAAGTTGGAGTGTTCGAATGAAGATTGCTGTTGGAACTGCTCGGGGCCTTGAGTATCTCCACTGTAAAACAGATCCTCCTGTTATCTATAGAGACTTGAAATCTGCGAACATCTTATTAGACAGCGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCGCCAGAGTATGCCATGAGTGGCAAATTAACTCTCAAGTCTGATATCTACAGCTTTGGTGTGGTTTTGCTGGAGTTGATCACTGGACGTAGGGCAATAGATGCTGGTAAAAGACCAGGAGAGCAAAACTTAGTTTCCTGGTCTCGCCCATTTATAAGTGACCGGAGAAAGTTTGTACAAATGGTTGACCCTCTTTTGCAAGGACACTTCCCCATGCGCTGCTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAGTTCCGTCCACTTATTGGTGATATTGTTGTTGCACTGGAGTACTTAGCTTCTCAGAGTATCTCTGAAGTCCATAGACATGGTGTGCCCCGCCCACAACTGCAACCACCTCAAGAAATAGACAGAGATTAA 1113 0.434 MSCFSCLFSGRKDVSRVEVDNGSRSTTTSTEGERKKECSESGSSSKSNNKAAASFGFRELAEATKGFKEVNLIGEGGFGRVYKGRLPTGEVVAIKQLSHDGHQGFQEFVMEVLMLSLHHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLNQDKEPLSWSVRMKIAVGTARGLEYLHCKTDPPVIYRDLKSANILLDSEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDAGKRPGEQNLVSWSRPFISDRRKFVQMVDPLLQGHFPMRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSISEVHRHGVPRPQLQPPQEIDRD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00033 370 CDD STKc_IRAK 73 341 - -
Gabi3280g00033 370 MobiDBLite consensus disorder prediction 17 49 - -
Gabi3280g00033 370 Gene3D Transferase(Phosphotransferase) domain 1 143 356 - -
Gabi3280g00033 370 FunFam probable serine/threonine-protein kinase RLCKVII 39 142 - -
Gabi3280g00033 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gabi3280g00033 370 Pfam Protein kinase domain 67 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00033 370 FunFam Serine/threonine-protein kinase PBS1 143 356 - -
Gabi3280g00033 370 SMART serkin_6 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00033 370 ProSiteProfiles Protein kinase domain profile. 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00033 370 Gene3D Phosphorylase Kinase; domain 1 25 142 - -
Gabi3280g00033 370 PANTHER OS07G0668900 PROTEIN 25 349 - -
Gabi3280g00033 370 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Gabi3280g00033 370 SUPERFAMILY Protein kinase-like (PK-like) 49 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00033 Gabi-Chr3280 224882 229997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00033 1 359 Glycoside Hydrolase AT3G07070 58.245 2.30e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi3280g00033 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00033 - - gmx:100796595 567.77