Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3280g00029 | ATGAAAGGTGGCAAGTCGAAGACCGAATCGAAGAGAGCTGATGCCAAACTTGCTGTGAATAAGAAAGGTGGCGCCGCCACCAAGGGTAGCAGGAAACCAAGCAAGGGGAAGGCAGCCAAAGACCCTAACAAGCCAAAGAGACCTCCCAGTGCTTTCTTCGTTTTCATGGAGGAATTTAGGAAACAGTTCAACAAGGAGAATCCAGACAACAAAGCAGTATCTGCTGTGGGCAAAGCTGCTGGAGCAAAGTGGAAGTCTTTGTCTGATGCTGAGAAAGCACCATATGTTGCAAAGGCAGAGAAACGAAAGGCTGATTATGAGAAGAGCATGAGAGCCTATAACAAGAAACAAGCTGAAGGTCCTACTGCAGGAGACGAAGAAGAATCTGAGAAATCAATATCTGAGGTGAATGATGAGGATGACGACGAGGATGATGATGGCGAGGAGGATGATGACGAGTAG | 462 | 0.4719 | MKGGKSKTESKRADAKLAVNKKGGAATKGSRKPSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSLSDAEKAPYVAKAEKRKADYEKSMRAYNKKQAEGPTAGDEEESEKSISEVNDEDDDEDDDGEEDDDE | 153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3280g00029 | 153 | SMART | hmgende2 | 44 | 115 | IPR009071 | - | |
Gabi3280g00029 | 153 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
Gabi3280g00029 | 153 | SUPERFAMILY | HMG-box | 32 | 121 | IPR036910 | - | |
Gabi3280g00029 | 153 | MobiDBLite | consensus disorder prediction | 79 | 153 | - | - | |
Gabi3280g00029 | 153 | CDD | HMG-box_AtHMGB1-like | 46 | 106 | - | - | |
Gabi3280g00029 | 153 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 45 | 114 | IPR009071 | - | |
Gabi3280g00029 | 153 | Coils | Coil | 96 | 116 | - | - | |
Gabi3280g00029 | 153 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 1 | 149 | IPR031061 | - | |
Gabi3280g00029 | 153 | MobiDBLite | consensus disorder prediction | 94 | 130 | - | - | |
Gabi3280g00029 | 153 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Gabi3280g00029 | 153 | Pfam | HMG (high mobility group) box | 45 | 114 | IPR009071 | - | |
Gabi3280g00029 | 153 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Gabi3280g00029 | 153 | Gene3D | High mobility group box domain | 28 | 135 | IPR036910 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3280g00029 | Gabi-Chr3280 | 193602 | 195516 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Gabi3280g00029 | HMG_box | 5.3e-25 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3280g00029 | K25507 | - | qsa:O6P43_016371 | 235.728 |