Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00029 ATGAAAGGTGGCAAGTCGAAGACCGAATCGAAGAGAGCTGATGCCAAACTTGCTGTGAATAAGAAAGGTGGCGCCGCCACCAAGGGTAGCAGGAAACCAAGCAAGGGGAAGGCAGCCAAAGACCCTAACAAGCCAAAGAGACCTCCCAGTGCTTTCTTCGTTTTCATGGAGGAATTTAGGAAACAGTTCAACAAGGAGAATCCAGACAACAAAGCAGTATCTGCTGTGGGCAAAGCTGCTGGAGCAAAGTGGAAGTCTTTGTCTGATGCTGAGAAAGCACCATATGTTGCAAAGGCAGAGAAACGAAAGGCTGATTATGAGAAGAGCATGAGAGCCTATAACAAGAAACAAGCTGAAGGTCCTACTGCAGGAGACGAAGAAGAATCTGAGAAATCAATATCTGAGGTGAATGATGAGGATGACGACGAGGATGATGATGGCGAGGAGGATGATGACGAGTAG 462 0.4719 MKGGKSKTESKRADAKLAVNKKGGAATKGSRKPSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSLSDAEKAPYVAKAEKRKADYEKSMRAYNKKQAEGPTAGDEEESEKSISEVNDEDDDEDDDGEEDDDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00029 153 SMART hmgende2 44 115 IPR009071 -
Gabi3280g00029 153 MobiDBLite consensus disorder prediction 131 153 - -
Gabi3280g00029 153 SUPERFAMILY HMG-box 32 121 IPR036910 -
Gabi3280g00029 153 MobiDBLite consensus disorder prediction 79 153 - -
Gabi3280g00029 153 CDD HMG-box_AtHMGB1-like 46 106 - -
Gabi3280g00029 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Gabi3280g00029 153 Coils Coil 96 116 - -
Gabi3280g00029 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Gabi3280g00029 153 MobiDBLite consensus disorder prediction 94 130 - -
Gabi3280g00029 153 MobiDBLite consensus disorder prediction 1 51 - -
Gabi3280g00029 153 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Gabi3280g00029 153 MobiDBLite consensus disorder prediction 1 18 - -
Gabi3280g00029 153 Gene3D High mobility group box domain 28 135 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00029 Gabi-Chr3280 193602 195516 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi3280g00029 HMG_box 5.3e-25 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00029 K25507 - qsa:O6P43_016371 235.728