Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00027 ATGGAGACAGAGCACGAGATCTCAAATGGTATTGGAAGCTTGTATGTCAAGGTGATGACAGACGAACAAATGGAACTTCTGAGGCAACAGATTTCTGTCTACGACACCATATGTGACCGCCTCGTTGAGATGCACAAGGCCATAACTACCCAACAGGACCTCGCAGGACTTGGGTTGGGTAATTTGTACTGTGATCCACTTATGGCTTGTTCTGGACACAAGATAACTGCGAGGCAGCGTTGGACTCCAACGCCTCTTCAGCTTCAAATACTCGAGCGTATTTTTGATGAAGGCAATGGTACTCCAAGCAAACAGAAGATCAAAGACATAGCCATTGAACTTGGTCAACATGGTCAAATATCAGAGACAAATGTCTATAATTGGTTTCAGAATAGAAGAGCTCGTTCAAAACGTAAGCAACTAGCTCCCACACTAAGCAATGTGGAACCAGAGGCTGACACAGAATTTGAATCTCCGAAAGACAAAAAGACACGTTCAGAGAGCGTTCAACTTCAATCCTACGAGAATTCATCACCTCATAGGGCCAAGGATTTATACATCGAGAGTCCTGATAGAGGATTTGACCAATTGATGGGTAAAGTGGAAGCTGCAGGCTACTACAGTTCTTATTTTCTTTGA 639 0.4366 METEHEISNGIGSLYVKVMTDEQMELLRQQISVYDTICDRLVEMHKAITTQQDLAGLGLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDIAIELGQHGQISETNVYNWFQNRRARSKRKQLAPTLSNVEPEADTEFESPKDKKTRSESVQLQSYENSSPHRAKDLYIESPDRGFDQLMGKVEAAGYYSSYFL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00027 212 CDD homeodomain 78 140 IPR001356 GO:0003677
Gabi3280g00027 212 MobiDBLite consensus disorder prediction 139 183 - -
Gabi3280g00027 212 PANTHER WUSCHEL-RELATED HOMEOBOX 13 9 195 IPR044559 GO:0003700
Gabi3280g00027 212 SUPERFAMILY Homeodomain-like 77 140 IPR009057 -
Gabi3280g00027 212 Gene3D - 79 142 - -
Gabi3280g00027 212 Pfam Homeodomain 78 138 IPR001356 GO:0003677
Gabi3280g00027 212 ProSiteProfiles 'Homeobox' domain profile. 74 139 IPR001356 GO:0003677
Gabi3280g00027 212 MobiDBLite consensus disorder prediction 153 168 - -
Gabi3280g00027 212 SMART HOX_1 76 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00027 Gabi-Chr3280 178095 179264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00027 14 210 Wox Gene Family AT4G35550 53.982 1.36e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3280g00027 Homeodomain 2.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00027 - - pvu:PHAVU_009G012200g 356.681