Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00024 ATGATGATGAGAATAAGGTTGTCACAGGAGTTTTTGGCTGAAGGGGACACTGTGCGTACGGTAGTAAAATTTCTTTCCACCGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCCTTGCTATACGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAACTCAGAAGATCTTTCCACAGTTGAGAAAGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAGTGGTAGATTGAAGCCTCTTCTGACCCAGCTTCTTGAAGGTCCTCCTGAAACCAAACTATCCATGGCTGGATACCTTGGCGAGCTGGTTTTGGACAATGATGTTAAAGTTCTTGTTGCTAGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGAGCCAAGTGCAAAGGTTTTAATAGAGGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTCGCAGTGGGTCCTAATCTGCTTCCCACAAGATTAAAAGAGATCTCTGCTACAATTCTTGCTAGTGTCGTGAATTCAGGAGAAGACTTTGATTCCATTCCACTTGGTCCTGATCACCAAACTCTGGTCTCAGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTACTTCTCCAACTACGGTTCTGAGTGTTGTTGCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTTGTTCAATTCATTGAGGCACCACAGAAAGATCTACGTGTAGCTTCCATAAGACTTCTTCAGAATTTGTCTCCTCACATGGGTCATGAACTAGCTGATGCACTACGTGGCTCTGTTGGACAGCTTGGTAGTCTGATTAGAGTCATATCAGAAAATACAGGAATTGCTGAAGAGCAGGCAGCGGCTGTTGGTCTTTTAGCTGATCTACCTGAGAGGGATTTGGGCCTTACAAGACAGCTACTGGATGAAGGTGCCTTTCTGCTGGTCATATCTAGGGTGACTGCCATCAGGCAGGGAGAGATCAGAGGAAACCGCTTCATGACGCCATTTCTTGAAGGTCTTGTCAAGATTCTTGCACGGGTTACGTATGTCTTAGCTGATGAGCCTGATGCCATTGCACTCTGCCGTGAGCACAATCTAGCAGCATTGTTTATTGAACTGCTTCAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATTTATCACAAGAATCAAAAAATCTAACCACATTGCCGGAGTTGCCATCGCCGGGTTTTTGTGCTTCGGTCTTTACCTGCTTCAGCAAACAGCCAGTAATAACTGGATTGTGTAGGATCCACCGAGGGATGTGTTCTTTGAAAGAAACATTTTGTCTGTGGGAAGGGCAGGCAGTCCTTAAGTTAGTAGCTCTGCTGGACCACACTAATGTGAATGTGGTTGAGGCGGCACTTGCAGCCTTATCTACTTTAATAGATGATGGAGTAGATATTGAGCAAGGAGTTTTGGTGTTGTGTGAAGCAGAGGCAGTGAAGCCTATACTTGATGTGTTACTTGAGAAACGGACTGAAATTTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGCGAACAGATGATATAGCCTACGAAGTTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGACGCTTTCCAGCATGGTGACTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGACAAGATACCCAACTTCTCTGGAATCTTTCCAAACATGGCATAA 1914 0.4399 MMMRIRLSQEFLAEGDTVRTVVKFLSTELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAESGRLKPLLTQLLEGPPETKLSMAGYLGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIRLLQNLSPHMGHELADALRGSVGQLGSLIRVISENTGIAEEQAAAVGLLADLPERDLGLTRQLLDEGAFLLVISRVTAIRQGEIRGNRFMTPFLEGLVKILARVTYVLADEPDAIALCREHNLAALFIELLQTNGLDNVQMVSATALENLSQESKNLTTLPELPSPGFCASVFTCFSKQPVITGLCRIHRGMCSLKETFCLWEGQAVLKLVALLDHTNVNVVEAALAALSTLIDDGVDIEQGVLVLCEAEAVKPILDVLLEKRTEILRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00024 637 SMART arm_5 414 455 IPR000225 GO:0005515
Gabi3280g00024 637 SMART arm_5 541 583 IPR000225 GO:0005515
Gabi3280g00024 637 SMART arm_5 171 216 IPR000225 GO:0005515
Gabi3280g00024 637 SMART arm_5 496 537 IPR000225 GO:0005515
Gabi3280g00024 637 SMART arm_5 90 130 IPR000225 GO:0005515
Gabi3280g00024 637 SMART arm_5 270 311 IPR000225 GO:0005515
Gabi3280g00024 637 SMART arm_5 131 170 IPR000225 GO:0005515
Gabi3280g00024 637 Coils Coil 80 100 - -
Gabi3280g00024 637 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 633 - -
Gabi3280g00024 637 SUPERFAMILY ARM repeat 9 268 IPR016024 -
Gabi3280g00024 637 Gene3D - 132 310 IPR011989 -
Gabi3280g00024 637 SUPERFAMILY ARM repeat 283 625 IPR016024 -
Gabi3280g00024 637 Gene3D - 397 626 IPR011989 -
Gabi3280g00024 637 Gene3D - 5 112 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00024 Gabi-Chr3280 151029 154300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00024 8 637 U-box Gene Family AT1G76390 66.772 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00024 - - gmx:100815928 1091.64