Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00023 ATGGCTTCAAGCTGGGATGGTAGTAATGACCCTGGTAGTCAGTCAGATGATAGCCTTCATTTTGAGAGGTTGCACATTGAGCCTATTTATGATGCTTTTGTGTGTCCTCTGACGAAGCAAGTTATGCGTGATCCCGTTACTTTAGAAAATGGACGGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGAAGGAAACTGGTTTGCCCTTTGACTCTGCAAGAATTAAGAAGCACAGAAATGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGCTCATTGAATACGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTTCAGCACATCTGCCGAAGAAGCAGGTCGAATAAACACGTTGTGCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTGGCAACCGTAAGATTCGTCATAGAGCATTGGAAACCCTAAGAATTGTGGTAGAGGATGATGATGAGAATAAGGAGTTTTTGGCTGAAGGGGACACTGTGCGTACGGTAGTAAAATTTCTTTCCACCGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCCTTGCTATACGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAACTCAGAAGATCTTTCCACAGTTGAGAAAGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAGTGGTAGATTGAAGCCTCTTCTGACCCAGCTTCTTGAAGGTCCTCCTGAAACCAAACTATCCATGGCTGGATACCTTGGCGAGCTGGTTTTGGACAATGATGTTAAAGTTCTTGTTGCTAGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGAGCCAAGTGCAAAGGTTTTAATAGAGGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTCGCAGTGGGTCCTAATCTGCTTCCCACAAGATTAAAAGAGATCTCTGCTACAATTCTTGCTAGTGTCGTGAATTCAGGAGAAGACTTTGATTCCATTCCACTTGGTCCTGATCACCAAACTCTGGTCTCAGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTACTTCTCCAACTACGGTTCTGAGTGTTGTTGCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTTGTTCAATTCATTGAGGCACCACAGAAAGATCTACGTGTAGCTTCCATAAGACTTCTTCAGAATTTGTCTCCTCACATGGGTCATGAACTAGCTGATGCACTACGTGGCTCTGTTGGACAGCTTGGTAGTCTGATTAGAGTCATATCAGAAAATACAGGAATTGCTGAAGAGCAGGCAGCGGCTGTTGGTCTTTTAGCTGATCTACCTGAGAGGGATTTGGGCCTTACAAGACAGCTACTGGATGAAGGTGCCTTTCTGCTGGTCATATCTAGGGTGACTGCCATCAGGCAGGGAGAGATCAGAGGAAACCGCTTCATGACGCCATTTCTTGAAGGTCTTGTCAAGATTCTTGCACGGGTTACGTATGTCTTAGCTGATGAGCCTGATGCCATTGCACTCTGCCGTGAGCACAATCTAGCAGCATTGTTTATTGAACTGCTTCAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATTTATCACAAGAATCAAAAAATCTAACCACATTGCCGGAGTTGCCATCGCCGGGTTTTTGTGCTTCGGTCTTTACCTGCTTCAGCAAACAGCCAGTAATAACTGGATTGTGTAGGATCCACCGAGGGATGTGTTCTTTGAAAGAAACATTTTGTCTGTGGGAAGGGCAGGCAGTCCTTAAGTTAGTAGCTCTGCTGGACCACACTAATGTGAATGTGGTTGAGGCGGCACTTGCAGCCTTATCTACTTTAATAGATGATGGAGTAGATATTGAGCAAGGAGTTTTGGTGTTGTGTGAAGCAGAGGCAGTGAAGCCTATACTTGATGTGTTACTTGAGAAACGGACTGAAATTTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGCGAACAGATGATATAGCCTACGAAGTTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGACGCTTTCCAGCATGGTGACTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGACAAGATACCCAACTTCTCTGGAATCTTTCCAAACATGGCATAA 2442 0.441 MASSWDGSNDPGSQSDDSLHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGRTFEREAIEKWFKECRESGRKLVCPLTLQELRSTEMNPSMALRNTIEEWTTRNEAAQLDMARRSLNTGSPENETLQALKYVQHICRRSRSNKHVVRNAGLIPMIVDMLKSGNRKIRHRALETLRIVVEDDDENKEFLAEGDTVRTVVKFLSTELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAESGRLKPLLTQLLEGPPETKLSMAGYLGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIRLLQNLSPHMGHELADALRGSVGQLGSLIRVISENTGIAEEQAAAVGLLADLPERDLGLTRQLLDEGAFLLVISRVTAIRQGEIRGNRFMTPFLEGLVKILARVTYVLADEPDAIALCREHNLAALFIELLQTNGLDNVQMVSATALENLSQESKNLTTLPELPSPGFCASVFTCFSKQPVITGLCRIHRGMCSLKETFCLWEGQAVLKLVALLDHTNVNVVEAALAALSTLIDDGVDIEQGVLVLCEAEAVKPILDVLLEKRTEILRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMA 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00023 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Gabi3280g00023 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Gabi3280g00023 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Gabi3280g00023 813 Gene3D - 317 486 IPR011989 -
Gabi3280g00023 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 809 - -
Gabi3280g00023 813 SUPERFAMILY ARM repeat 458 801 IPR016024 -
Gabi3280g00023 813 Gene3D - 573 803 IPR011989 -
Gabi3280g00023 813 SUPERFAMILY ARM repeat 114 444 IPR016024 -
Gabi3280g00023 813 Coils Coil 256 276 - -
Gabi3280g00023 813 Gene3D - 114 316 IPR011989 -
Gabi3280g00023 813 SUPERFAMILY RING/U-box 23 110 - -
Gabi3280g00023 813 SMART arm_5 139 179 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 307 346 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 181 221 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 347 392 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 717 759 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 590 631 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 672 713 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 446 487 IPR000225 GO:0005515
Gabi3280g00023 813 SMART arm_5 266 306 IPR000225 GO:0005515
Gabi3280g00023 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 109 IPR013083 -
Gabi3280g00023 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00023 Gabi-Chr3280 151029 155763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00023 20 813 U-box Gene Family AT1G20780 67.044 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00023 - - gmx:100789746 1427.92