Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00019 ATGCCTGTGGGTATGGATTTTTCTCCTCCATTTACGATGTTAGAAGGCGATTACAACAAAGGCAATGCGTTCGTGGTTGAAGATGAGAAAGCAGGAGAATTGGATAATAATCTAAAACCAATAACAAAGGGTAAACCTCCACTGCATGTCTCGAGTTTGAGACACAGCCTTAGCTCCACTAGATTGGTGGCTGCAGCAGATTTGAGTTTGGATGTTGGGGTTACTGAGAGCGAGGCATCTTCTGAAGACAAGACAGAGTTTCTACCCATATTTCGGTCAGGAAGTTGTGCTGAAATAGGACCTAAACAATATATGGAAGATGAACACATATGTATAGATAATCTTATTCAGCATATGGGTTCAGAATCAAATATTCCTTTACCTGGAGCTTTCTATGGGGTGTTTGATGGTCATGGAGGTACAGACGCAGCTTCATTTATTAGAAATAACATCCTCAGATTCATAGTTGAGGACTCTCACTTTCCAACTTGCGTGGGGAAGGCAATTACAAGTGCGTTTCTAAGAGCTGATTATGCATTTGCAGATTCTAGCTCGCTAGATATCTCCTCTGGCACCACTGCTTTAACTGCTCTTGTATTTGGAAGGACTATGATAATTGCCAATGCTGGGGATTGTCGAGCTGTGCTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAAGTTGCATTTCGGAAAAGCTAAGGATTGAGAGACTTGGTGGAGTGGTATACGATGGATACTTGAATGGCCAGTTATCTGTTTCCCGTGCCTTGGGAGACTGGCACATGAAGGGTCTCAAGGGTTCTGCCTGCCCTTTGAGTGCTGAACCAGAGTTGAAGGAAATCCACCTGACTGAGGATGATGAGTTCTTGATTATGGGCTGCGATGGCCTGTGGGATGTAATGAGCAACCAATGTGCTGTGACCATGGCAAGGAAAGAATTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGCTAGTCAGAGAGGCTCTGAAGCGTAACTCGTGTGATAATTTAACAGTTATAGTGGTATGTTTCTCCTCAGATCCTCCTCCTAGGATAGAGACACCTCCTGCTCGAGTAAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTTAAGGGTGTATTGGACTGTTAG 1158 0.4396 MPVGMDFSPPFTMLEGDYNKGNAFVVEDEKAGELDNNLKPITKGKPPLHVSSLRHSLSSTRLVAAADLSLDVGVTESEASSEDKTEFLPIFRSGSCAEIGPKQYMEDEHICIDNLIQHMGSESNIPLPGAFYGVFDGHGGTDAASFIRNNILRFIVEDSHFPTCVGKAITSAFLRADYAFADSSSLDISSGTTALTALVFGRTMIIANAGDCRAVLGRRGRAIEMSKDQKPSCISEKLRIERLGGVVYDGYLNGQLSVSRALGDWHMKGLKGSACPLSAEPELKEIHLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVVCFSSDPPPRIETPPARVRRSISAEGLNLLKGVLDC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00019 385 FunFam Probable protein phosphatase 2C 22 76 355 - -
Gabi3280g00019 385 PANTHER PROTEIN PHOSPHATASE 2C 82 350 IPR015655 GO:0004722|GO:0006470
Gabi3280g00019 385 SMART PP2C_4 82 350 IPR001932 -
Gabi3280g00019 385 Pfam Protein phosphatase 2C 95 344 IPR001932 -
Gabi3280g00019 385 Gene3D - 69 355 IPR036457 -
Gabi3280g00019 385 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Gabi3280g00019 385 CDD PP2Cc 91 352 IPR001932 -
Gabi3280g00019 385 SMART PP2C_SIG_2 107 352 IPR001932 -
Gabi3280g00019 385 ProSiteProfiles PPM-type phosphatase domain profile. 92 352 IPR001932 -
Gabi3280g00019 385 SUPERFAMILY PP2C-like 87 353 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00019 Gabi-Chr3280 134980 138241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00019 3 384 PP2C-type Phosphatase Gene Family AT2G33700 72.063 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00019 K14803 - gmx:100778015 674.085