Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00018 ATGCCTGTGGGTATGGATTTTTCTCCTCCATTTACGATGTTAGAAGGCGATTACAACAAAGGCAATGCGTTCGTGGTTGAAGATGAGAAAGCAGGAGAATTGGATAATAATCTAAAACCAATAACAAAGGGTAAACCTCCACTGCATGTCTCGAGTTTGAGACACAGCCTTAGCTCCACTAGATTGGTGGCTGCAGCAGATTTGGTTAGTTTATCTAATCTTCATCACGAGGCATCTTCTGAAGACAAGACAGAGTTTCTACCCATATTTCGGTCAGGAAGTTGTGCTGAAATAGGACCTAAACAATATATGGAAGATGAACACATATGTATAGATAATCTTATTCAGCATATGGGTTCAGAATCAAATATTCCTTTACCTGGAGCTTTCTATGGGGTGTTTGATGGTCATGGAGGTACAGACGCAGCTTCATTTATTAGAAATAACATCCTCAGATTCATAGTTGAGGACTCTCACTTTCCAACTTGCGTGGGGAAGGCAATTACAAGTGCGTTTCTAAGAGCTGATTATGCATTTGCAGATTCTAGCTCGCTAGATATCTCCTCTGGCACCACTGCTTTAACTGCTCTTGTATTTGGAAGGACTATGATAATTGCCAATGCTGGGGATTGTCGAGCTGTGCTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAAGTTGCATTTCGGAAAAGCTAAGGATTGAGAGACTTGGTGGAGTGGTATACGATGGATACTTGAATGGCCAGTTATCTGTTTCCCGTGCCTTGGGAGACTGGCACATGAAGGGTCTCAAGGGTTCTGCCTGCCCTTTGAGTGCTGAACCAGAGTTGAAGGAAATCCACCTGACTGAGGATGATGAGTTCTTGATTATGGGCTGCGATGGCCTGTGGGATGTAATGAGCAACCAATGTGCTGTGACCATGGCAAGGAAAGAATTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGCTAGTCAGAGAGGCTCTGAAGCGTAACTCGTGTGATAATTTAACAGTTATAGTGGTATGTTTCTCCTCAGATCCTCCTCCTAGGATAGAGACACCTCCTGCTCGAGTAAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTTAAGGGTGTATTGGACTGTTAG 1155 0.4355 MPVGMDFSPPFTMLEGDYNKGNAFVVEDEKAGELDNNLKPITKGKPPLHVSSLRHSLSSTRLVAAADLVSLSNLHHEASSEDKTEFLPIFRSGSCAEIGPKQYMEDEHICIDNLIQHMGSESNIPLPGAFYGVFDGHGGTDAASFIRNNILRFIVEDSHFPTCVGKAITSAFLRADYAFADSSSLDISSGTTALTALVFGRTMIIANAGDCRAVLGRRGRAIEMSKDQKPSCISEKLRIERLGGVVYDGYLNGQLSVSRALGDWHMKGLKGSACPLSAEPELKEIHLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVVCFSSDPPPRIETPPARVRRSISAEGLNLLKGVLDC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00018 384 SMART PP2C_4 81 349 IPR001932 -
Gabi3280g00018 384 FunFam Probable protein phosphatase 2C 22 75 354 - -
Gabi3280g00018 384 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Gabi3280g00018 384 CDD PP2Cc 90 351 IPR001932 -
Gabi3280g00018 384 SMART PP2C_SIG_2 106 351 IPR001932 -
Gabi3280g00018 384 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Gabi3280g00018 384 Gene3D - 70 354 IPR036457 -
Gabi3280g00018 384 Pfam Protein phosphatase 2C 94 343 IPR001932 -
Gabi3280g00018 384 PANTHER PROTEIN PHOSPHATASE 2C 81 349 IPR015655 GO:0004722|GO:0006470
Gabi3280g00018 384 SUPERFAMILY PP2C-like 85 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00018 Gabi-Chr3280 134980 138241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00018 3 383 PP2C-type Phosphatase Gene Family AT2G33700 72.324 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00018 K14803 - gmx:100778015 654.055