Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00017 ATGGAGGAAGCAGTGAATGATGTAAACGCCAATACAAGCATTCTACATGGAACAAAACTTGTTCTCAGTATGGAAAATTCCAATTGCAGTGGTTTTATGGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTAGTTGCTATATTAGGTCCACAATCTTCTGTGGTTGCCCACATACTATCCCATGTTGCAGATGAGCTCCGTGTTCCTCTGTTGTCATTTGCCGCAACAGATCCTACGCTCTCATCACTGCAGTTCCCATTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGACTGCAGTTGCTGAAATCATTGATTATTATGGTTGGAAGGAGGTCATTTCCATATATGTAGATGATGATTATGGACGAAATGGTGTGGCTGCATTAGATGATGAACTAGCAAGCAGGCGCTGTAGAATCTCCTTCAAGGCAGGAATTAAATCTGGACCTGGAGTTGACCGGGGTGAAATCATGAATTTGCTTGTTGAGGTGACAATGATGCAATCTAGAGTCATTGTTCTCCATGTACATCCTGACTCAGGATTTATGGTCTTCAATGTGGCACGTCATCTTGAGATGACAGGGAATGGCTATGTGTGGATAGCCACAGATTGGCTCTCATCTGTTCTAGATTCTGCTTCTCTCCCTTCAGATACAATGGATGATCTGCAGGGAGTGCTTGTTTTGCGCCAGCATACACCTGATTCAGATAGAAAAAAAGCATTTTTCTCCGGGTGGAACAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTACGATTCTATTTGGCTGGTTGCACATGCTATTGATGCATTTTTCAACCAGGGTGGGATCGTTTCGTGTACCAATTACACAAGTTTACATGATGATAAGGGAGGTGCTCTTAACCTTGATGCAATGAGCATTTTTGATAATGGAACACTTCTCCTGAATAACATATTGCAGAGTGATTTTGTTGGATTAACAGGTCCAATGAAATTTCAATCAGACAGATCTCTTGTTCGTCCTGCCTTTGATGTTATTAATGTGGTTGGAACTGGGATTCGTCGGGTTGGTTACTGGTCCAACTATTCTGGTCTGTCAATTATACCTCCTGAGACATTGTATACTAAGCCACCTAATAAATCAAGTGCAAACCAGCAGCTTCAGGGCGTGCTATGGCCTGGAGAAACAGTCTCGAAACCCCGTGGATGGGTCTTCCCAAATAATGGAAAACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTTCCGTGAATTTTTATCGCCGGTGCAGGGAACGGATATGTTTAAAGGTTTCTGTATTGATGTTTTCACTGCAGCTGTAAACTTGTTACCATATGGTGTTCCATACCTCTTTGTCCCATTCGGAGATGGTCACAAAAATCCAAGCTACACAGAACTTGTCAACTTAATCACCGCTGGCTACTTTGATGGTGCTATTGGTGACATTGCCATTGTCACAAATCGGACAAGGATTGTAGATTTTACTCAGCCATATGCTGCGTCTGGACTTGTAGTGGTGGCTCCTTTTAAGAAAATCAATTCTGGCGGTTGGTCTTTCCTACAGCCATTCACTCCACAAATGTGGCTTGTGACTGCTTGTTTCTTCTTTTTCGTTGGGATAGTTGTATGGACATTGGAACACAGGATTAATGATGAGTTCAGGGGTTCACCTAAACAACAAATTATAACCATTTTATGGTTTAGTCTGTCAACTCTATTTTTTTCCCACAGAGAGAATACGGTGAGCACTCTTGGTCGTGTGGTGGTACTCATATGGTTGTTTGTGGTTTTAATCATCAATTCCAGCTACACAGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATATTCTCCTATCAATGGAATAGATAGCTTAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTGGGTTCATTCGCAGAACGTTACTTGACTGAGGATATTGGAATATCCAAATCTAGACTTGTTGCCCTTGGATCTCCAGAAGCATATGCCAAGGCACTCCAGCTTGGTCCTGATAAAGGAGGTGTTGCTGCTATTGTTGACGAGCGACCCTATGTCGAAATCTTCTTATCAACTCAGTGCACATTTAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCTGTGGATTTGTCAACTGCCATTCTACAACTTTCTGAAACTGGTGATCTGCAGCGGATTCATGATAAGTGGATGACACGAAGCACCTGTAGTTTAGATAATGCTGAAATTGAATCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGCTTTATTGCTCTTGTCATATATTTTTTGCAGATTATGCTCCAGCTGTGGCATTCTGATCCTTCTGAACCTGCTTCTAATGTTAGTTCAGTTTCTGGTCGTTTTCAAAGATTTCTTTCCCTACTTGACAAGAAGGAAGATTCATCAGGGAGTGAAAGAAGAAAGAGGAATGGAGAGGAAAGATCATCTGAAGATCAATTGGGGAGGCAGCCAAAGAGGAGACAAACTGAAACTAATTAA 2604 0.4247 MEEAVNDVNANTSILHGTKLVLSMENSNCSGFMGMVQALRFMETDVVAILGPQSSVVAHILSHVADELRVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMTAVAEIIDYYGWKEVISIYVDDDYGRNGVAALDDELASRRCRISFKAGIKSGPGVDRGEIMNLLVEVTMMQSRVIVLHVHPDSGFMVFNVARHLEMTGNGYVWIATDWLSSVLDSASLPSDTMDDLQGVLVLRQHTPDSDRKKAFFSGWNKLTGGSLGLHSYGLYAYDSIWLVAHAIDAFFNQGGIVSCTNYTSLHDDKGGALNLDAMSIFDNGTLLLNNILQSDFVGLTGPMKFQSDRSLVRPAFDVINVVGTGIRRVGYWSNYSGLSIIPPETLYTKPPNKSSANQQLQGVLWPGETVSKPRGWVFPNNGKQLRIGVPIRVSFREFLSPVQGTDMFKGFCIDVFTAAVNLLPYGVPYLFVPFGDGHKNPSYTELVNLITAGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPQMWLVTACFFFFVGIVVWTLEHRINDEFRGSPKQQIITILWFSLSTLFFSHRENTVSTLGRVVVLIWLFVVLIINSSYTASLTSILTVQQLYSPINGIDSLKASDEPIGFQVGSFAERYLTEDIGISKSRLVALGSPEAYAKALQLGPDKGGVAAIVDERPYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTRSTCSLDNAEIESDRLQLKSFWGLFLICGIACFIALVIYFLQIMLQLWHSDPSEPASNVSSVSGRFQRFLSLLDKKEDSSGSERRKRNGEERSSEDQLGRQPKRRQTETN 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00017 867 Gene3D - 686 721 - -
Gabi3280g00017 867 Gene3D - 526 653 - -
Gabi3280g00017 867 Pfam Receptor family ligand binding region 1 354 IPR001828 -
Gabi3280g00017 867 Gene3D - 411 525 - -
Gabi3280g00017 867 CDD PBP1_GABAb_receptor_plant 1 370 IPR044440 -
Gabi3280g00017 867 Gene3D - 96 369 - -
Gabi3280g00017 867 PIRSF IGluLR_plant 1 867 IPR017103 -
Gabi3280g00017 867 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 818 IPR015683 -
Gabi3280g00017 867 CDD GluR_Plant 414 755 - -
Gabi3280g00017 867 Gene3D - 2 344 - -
Gabi3280g00017 867 FunFam Glutamate receptor 527 657 - -
Gabi3280g00017 867 Pfam Ligand-gated ion channel 758 789 IPR001320 GO:0015276|GO:0016020
Gabi3280g00017 867 SUPERFAMILY Periplasmic binding protein-like I 1 408 IPR028082 -
Gabi3280g00017 867 FunFam Glutamate receptor 96 248 - -
Gabi3280g00017 867 SMART GluR_14 417 758 IPR001320 GO:0015276|GO:0016020
Gabi3280g00017 867 SUPERFAMILY Periplasmic binding protein-like II 394 758 - -
Gabi3280g00017 867 FunFam Glutamate receptor 411 526 - -
Gabi3280g00017 867 Pfam Bacterial extracellular solute-binding proteins, family 3 438 757 IPR001638 -
Gabi3280g00017 867 PRINTS Metabotropic glutamate GPCR signature 100 116 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi3280g00017 867 PRINTS Metabotropic glutamate GPCR signature 49 75 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi3280g00017 867 PRINTS Metabotropic glutamate GPCR signature 81 100 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi3280g00017 867 PRINTS Metabotropic glutamate GPCR signature 116 133 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi3280g00017 867 MobiDBLite consensus disorder prediction 830 867 - -
Gabi3280g00017 867 FunFam Glutamate receptor 653 760 - -
Gabi3280g00017 867 Gene3D - 722 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00017 Gabi-Chr3280 113044 117014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00017 1 846 Ion Channels AT1G42540 65.618 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00017 K05387 - gmx:102661260 1494.56