Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00007 ATGACTCGTTCCTTGAGATTTTTAGGCGAGCGCAACTCGTCCCCGGACTCACCTGACTCCGCCGTCTTCGATTCTGATTTCCTCGTCATCCTCACTGCTCTGCTCTGCGCTCTCATCTGCGTTCTTGGCCTCGTCGTCGTCTCACGCTGCGTCTGTCTCCGCCGCTTACGTTTCTCCTCCACCGCCAATGCGCAGCCTTCTCCGGCCGCCGCCAACAAAGGCGTCAAGAAAAAGGTTCTGCGCTCTCTTCCGAAGCTCACCGCGACCGCCGAATCCGCTGTAAAATTCGCCGATTGCGCGATCTGTCTGACCGAGTTCGCTGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGCCATGGATTCCACGTGTCCTGCATCGATGCGTGGCTCAGATCGCATTCTTCGTGCCCGTCGTGCCGTCAGATTCTGGTTTCTACGTGTGACAAGTGCGGTGGTATCTCTGCCCCTGCGACTGCGAGCTCGAGCACCGCGCCGCCACCGGATTCGGAGGCCAGATTCAAGGACGATGGCAATAGGTTCTTGCCGTAG 552 0.5906 MTRSLRFLGERNSSPDSPDSAVFDSDFLVILTALLCALICVLGLVVVSRCVCLRRLRFSSTANAQPSPAAANKGVKKKVLRSLPKLTATAESAVKFADCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVSTCDKCGGISAPATASSSTAPPPDSEARFKDDGNRFLP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00007 183 CDD RING-H2_EL5-like 98 141 - -
Gabi3280g00007 183 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 152 - -
Gabi3280g00007 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Gabi3280g00007 183 Pfam Ring finger domain 98 141 IPR001841 -
Gabi3280g00007 183 SMART ring_2 99 140 IPR001841 -
Gabi3280g00007 183 MobiDBLite consensus disorder prediction 157 183 - -
Gabi3280g00007 183 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Gabi3280g00007 183 SUPERFAMILY RING/U-box 81 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00007 Gabi-Chr3280 51927 52596 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00007 1 183 C3H Transcription Factor Family AT1G76410 57.672 6.69e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00007 - - gmx:100794614 274.248