Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00004 ATGACTCGTCCCTTGAGACTTTTAGGCGAGCGCAACTCGTCCTCCGACTCACCTGATTCCACCGTCGTTGACTCTGACTTCGTCGTCATCCTCGCCGCTCTTCTCTGCGCTCTCATCTGTGTTCTTGGTCTCGTCGCCGTCTCACGCTGCGCCTGTCTCCGCCGCTTACGTTTCTTCTCCACCTCCGCTGCGCAGCCTCCTCCTCCTCCTGCCGCCGCAAACAAAGGCGTCAAGAAGAAGGTTCTGCGCTCTCTTCCGAAGCTCACCGCGACATCCGAATCCGCAGTAAAATTCTCCGATTGCGCGATCTGTCTGACCGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGCCATGGGTTCCACGTGTCCTGCATCGACGCGTGGCTCAGATCGCATTCGTCATGCCCGTCGTGCCGTCAGATACTGGTGGTTTCGAGGTGTGACAAGTGCGGCGGGATCTCTCCCCCTGGGAACTCGAGCAACGCGCCGCCACCGGATTCAGAGGCCATATTCAAGGACGATGCCAATCGATTCTTGCCATAG 555 0.591 MTRPLRLLGERNSSSDSPDSTVVDSDFVVILAALLCALICVLGLVAVSRCACLRRLRFFSTSAAQPPPPPAAANKGVKKKVLRSLPKLTATSESAVKFSDCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGISPPGNSSNAPPPDSEAIFKDDANRFLP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00004 184 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3280g00004 184 CDD RING-H2_EL5-like 100 143 - -
Gabi3280g00004 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 155 - -
Gabi3280g00004 184 MobiDBLite consensus disorder prediction 7 21 - -
Gabi3280g00004 184 SUPERFAMILY RING/U-box 82 149 - -
Gabi3280g00004 184 SMART ring_2 101 142 IPR001841 -
Gabi3280g00004 184 MobiDBLite consensus disorder prediction 159 184 - -
Gabi3280g00004 184 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Gabi3280g00004 184 Pfam Ring finger domain 100 143 IPR001841 -
Gabi3280g00004 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00004 Gabi-Chr3280 45165 46170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00004 1 184 C3H Transcription Factor Family AT1G20823 62.944 1.27e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00004 - - gmx:100794614 271.552