Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00043 ATGGAGGAAGCACTGAGGCGTCTCAACGGGATGACTCCGATTCCAGAACCCGACCCGCAGGACACCTGCACCTCCGGCAACCAGAAGCGTGGTGCCAACTCCTCCCCCACCACCGCCAACAAAAGAACTATAAGAGAAAACGGCGGCGGCGGCAGTGGTGGCGCCATGAGATACCGCGGTGTGAGGCGTAGGCCGTGGGGCCGTTACGCCGCCGAAATAAGAGACCCGCAGTCGAAGGAGCGACGCTGGCTCGGCACCTTCGACACGGCGGAGGAGGCCGCCTGCGCCTACGACTGCGCCGCACGAGCCATGCGGGGGCTGAAGGCTCGAACCAACTTCGTTTATCCAACCTCTCCACCTCACCCTTGTTCCGCCACCGAACGCATTTTCCCTTCCTTCAACTTCCCCAACAAGTCTCAGCAACCGTTCAACAAGATCAGCCATAACCGCCATTTATCTGGTGGCGCAGGTTGTTGGTCCTCATGCTCTGACCCACATGGGGTTGACTTTTCTGCGGCAACAACCACCCACCAGCGAAACTCTTCCATCAACATGCTTTTGTTTCGTGACTATCTCAACTCTTCTAACAACCATTCTTTGGTTTCTTCTTCTTCTTCTTCTTCTTCTCAGCAGTTTTACGACAAGGGAAGCTCCTCCATTCCATCGTACTCTGCTTGTTGTTCATCTTTGATGAATTCTTGTGGTGGCAATGATATCAGCGTGAGTGGCTCTTCTTCCTTCAAGATGAACGCCAATGGAACCAAAATCGCTGAAGCTGATGATGAAGACTTTGAATTCTTTCCGACAGAGCCTTCGGACTCAGGTTTGTTGGAAGAGATAGTTTCTAGGTTCTTGCCGAAATCGAAGCCTAAGAAATGCAAGAGTCCGCAAAAAACAGAGACTTTCTGCATCCCTGAGTCGGTTCCTCCACCTGCATATGATCACATGCTAGTTTCCGCTGCTCAATGCTATGATGAGACAAAGAAGGGATTTCTCAAGAACGAGGGTTTTGGTGTCTCTTGTGATTATCAAGGTTTTCCCATGCAACAATTTGACAACTTTAATGGGTTTAATACTGTGCAGGCTATGCCTCTGGGTAATGAACAAGTAATGATGACAGAGAACTCAATCATAGATGATATTTTTCAGTACCCAGAGCTTCTTAATGCTTTTGCAGTGAGGATGCAAAATGCATAG 1197 0.5004 MEEALRRLNGMTPIPEPDPQDTCTSGNQKRGANSSPTTANKRTIRENGGGGSGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHPCSATERIFPSFNFPNKSQQPFNKISHNRHLSGGAGCWSSCSDPHGVDFSAATTTHQRNSSINMLLFRDYLNSSNNHSLVSSSSSSSSQQFYDKGSSSIPSYSACCSSLMNSCGGNDISVSGSSSFKMNANGTKIAEADDEDFEFFPTEPSDSGLLEEIVSRFLPKSKPKKCKSPQKTETFCIPESVPPPAYDHMLVSAAQCYDETKKGFLKNEGFGVSCDYQGFPMQQFDNFNGFNTVQAMPLGNEQVMMTENSIIDDIFQYPELLNAFAVRMQNA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00043 398 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Gabi3277g00043 398 MobiDBLite consensus disorder prediction 18 45 - -
Gabi3277g00043 398 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Gabi3277g00043 398 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Gabi3277g00043 398 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Gabi3277g00043 398 MobiDBLite consensus disorder prediction 1 59 - -
Gabi3277g00043 398 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Gabi3277g00043 398 CDD AP2 57 113 IPR001471 GO:0003700|GO:0006355
Gabi3277g00043 398 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Gabi3277g00043 398 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Gabi3277g00043 398 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Gabi3277g00043 398 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00043 Gabi-Chr3277 452505 453701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00043 1 367 AP2-EREBP Transcription Factor Family AT1G24590 33.244 1.28e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3277g00043 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00043 - - gmx:102669715 368.237