Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00039 ATGGCGCGCTCTCGCCAAAATGTGGGACCTTGTTGCTCGAGACAGATGGGTCATTGTCGCCGCGTTCTCTGCTCTGATTCTCGCAGCAGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCCATCTTTTCGGCACGGGGTGCGGAAGTTACAGTTTTTCATCGGAATGTGCGTTTGTTAGTTCTGTTGTGTGCAACTTCGGGAATATGCAGGTCAAAATCTTTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACACTGAAACAGTTGGTGATTTGACGAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATTGTCTTCAGGGGACAGGTTCACTAATCTACTTGTTGATTTTGTCTTGGCCTCTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAATGATGTATCTCAAGAGACATTCTCTCTTATTAGAACAGTTCGAGTTTATGGAACAGAAGAAAAAGAACTTGGAAGGTACAAATCGTGGCTGGGGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGATTTTGGAGTTTTAGCTTCAACACTCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAACTTCTATCCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGAGAAAATATATCCTCTTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCACCTAGCAGCCAATTCATAACAAGAGGAGTAAAGTTGCAGAGGTTAATGGGGCGTATTGAGTTTCTAAATGTAGCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTTGTGCAACATGTAAACTTTGTTGTCCATCCTAATGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAACCTACAAATGGTCAGATTTTGATTGATGGTATCCCTCTTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGACAGGAACCCAAGCTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTACTCGAGATGTAAAGCAGGAGGATGTTGAATGGGCTGCGAAGCAGGCCTATGCCCATGACTTCATCTCAGCACTGCCCAATGGCTATGAAACACTTGTCGATGATGATCTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTCAAGGGTGTTCTTCGATCTGTTAGAAGTGACTCTGCAACAAGGAGAAGTGTAATAGTCATTGCACATAGGCTTTCTACCGTACAAGCAGCTGACCGGATTGTGGTGATGGATAACGGTCAAATTGTTGAGAACGGAAGTCACAGGGAGCTTCTCTTAAAAGATGGTTTATATGCACGGTTGACTAGAAAACAGGCTGATGCCATGGCATGA 1752 0.4224 MARSRQNVGPCCSRQMGHCRRVLCSDSRSSFGDFHTTFLDSIHLFGTGCGSYSFSSECAFVSSVVCNFGNMQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDTETVGDLTSRLGADCQQVSRVIGNDLNLILRNCLQGTGSLIYLLILSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANDVSQETFSLIRTVRVYGTEEKELGRYKSWLGKLADISLRQSAAYGFWSFSFNTLYHSTQVIAVLFGGTSILAGHITAEKLTKFILYSEWLIYSTWWVGENISSLMQSVGASEKVFHLMDLSPSSQFITRGVKLQRLMGRIEFLNVAFHYPSRPTVSVVQHVNFVVHPNEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGIPLKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTRDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRRSVIVIAHRLSTVQAADRIVVMDNGQIVENGSHRELLLKDGLYARLTRKQADAMA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00039 583 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 78 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3277g00039 583 Gene3D - 336 579 IPR027417 -
Gabi3277g00039 583 FunFam Multidrug ABC transporter ATP-binding protein 330 582 - -
Gabi3277g00039 583 ProSitePatterns ABC transporters family signature. 476 490 IPR017871 GO:0005524|GO:0016887
Gabi3277g00039 583 Gene3D ABC transporter type 1, transmembrane domain 79 335 IPR036640 GO:0005524|GO:0016020
Gabi3277g00039 583 SUPERFAMILY ABC transporter transmembrane region 76 318 IPR036640 GO:0005524|GO:0016020
Gabi3277g00039 583 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 338 577 IPR003439 GO:0005524
Gabi3277g00039 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 578 IPR027417 -
Gabi3277g00039 583 Pfam ABC transporter 357 504 IPR003439 GO:0005524
Gabi3277g00039 583 Pfam ABC transporter transmembrane region 56 289 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3277g00039 583 SMART AAA_5 365 554 IPR003593 GO:0016887
Gabi3277g00039 583 PANTHER ABC TRANSPORTER B FAMILY 64 575 IPR039421 -
Gabi3277g00039 583 CDD ABC_6TM_TAP 77 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00039 Gabi-Chr3277 373636 380426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00039 93 581 Calmodulin-binding Proteins AT2G36910 34.337 2.97e-73 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00039 - - pcin:129311051 992.26