Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00038 ATGCCTCTTCTAATAGCAGGAACACAACGTTCGTTACTTCCTCCGATCCCTCGCCATCATTACCACAACAACAACAACAACAAGAACAAGCTTCTTATCATAGCCTCTTCTCAGAAGCGCTTCCCTTTTGCCCCAACGCGAATTGTTTTCTCGAGGCACATTCGCGCAATCCCTCCTCTAAAGTCTGCGTCCATCAACGGGGTCTCCGTTCCAGAAGCTTCCAGCGAAGGCAATGCTGTTGAGTTTCTTGAGACAATACGAAAGTGGATTCGGTTCCTTCCTTCGATTTTTCCCGGTGGAAGTTGGTGGGACTTCTCAGACGAAATCGACGTTCAGGTACTGGCTCAGCCGGTGACCGTATGGCGCGCTCTCGCCAAAATGTGGGACCTTGTTGCTCGAGACAGATGGGTCATTGTCGCCGCGTTCTCTGCTCTGATTCTCGCAGCAGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCCATCTTTTCGGCACGGGGTGCGGAAGTTACAGTTTTTCATCGGAATGTGCGTTTGTTAGTTCTGTTGTGTGCAACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACACTGAAACAGTTGGTGATTTGACGAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATTGTCTTCAGGGGACAGGTTCACTAATCTACTTGTTGATTTTGTCTTGGCCTCTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAATGATGTATCTCAAGAGACATTCTCTCTTATTAGAACAGTTCGAGTTTATGGAACAGAAGAAAAAGAACTTGGAAGGTACAAATCGTGGCTGGGGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGATTTTGGAGTTTTAGCTTCAACACTCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAACTTCTATCCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGAGAAAATATATCCTCTTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCACCTAGCAGCCAATTCATAACAAGAGGAGTAAAGTTGCAGAGGTTAATGGGGCGTATTGAGTTTCTAAATGTAGCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTTGTGCAACATGTAAACTTTGTTGTCCATCCTAATGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAACCTACAAATGGTCAGATTTTGATTGATGGTATCCCTCTTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGACAGGAACCCAAGCTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTACTCGAGATGTAAAGCAGGAGGATGTTGAATGGGCTGCGAAGCAGGCCTATGCCCATGACTTCATCTCAGCACTGCCCAATGGCTATGAAACACTTGTCGATGATGATCTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTCAAGGGTGTTCTTCGATCTGTTAGAAGTGACTCTGCAACAAGGAGAAGTGTAATAGTCATTGCACATAGGCTTTCTACCGTACAAGCAGCTGACCGGATTGTGGTGATGGATAACGGTCAAATTGTTGAGAACGGAAGTCACAGGGAGCTTCTCTTAAAAGATGGTTTATATGCACGGTTGACTAGAAAACAGGCTGATGCCATGGCATGA 2100 0.4357 MPLLIAGTQRSLLPPIPRHHYHNNNNNKNKLLIIASSQKRFPFAPTRIVFSRHIRAIPPLKSASINGVSVPEASSEGNAVEFLETIRKWIRFLPSIFPGGSWWDFSDEIDVQVLAQPVTVWRALAKMWDLVARDRWVIVAAFSALILAAVSEISIPHFLTASIFSARGAEVTVFHRNVRLLVLLCATSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDTETVGDLTSRLGADCQQVSRVIGNDLNLILRNCLQGTGSLIYLLILSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANDVSQETFSLIRTVRVYGTEEKELGRYKSWLGKLADISLRQSAAYGFWSFSFNTLYHSTQVIAVLFGGTSILAGHITAEKLTKFILYSEWLIYSTWWVGENISSLMQSVGASEKVFHLMDLSPSSQFITRGVKLQRLMGRIEFLNVAFHYPSRPTVSVVQHVNFVVHPNEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGIPLKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTRDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRRSVIVIAHRLSTVQAADRIVVMDNGQIVENGSHRELLLKDGLYARLTRKQADAMA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00038 699 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 139 420 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3277g00038 699 FunFam Multidrug ABC transporter ATP-binding protein 446 698 - -
Gabi3277g00038 699 Gene3D - 444 698 IPR027417 -
Gabi3277g00038 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 694 IPR027417 -
Gabi3277g00038 699 SMART AAA_5 481 670 IPR003593 GO:0016887
Gabi3277g00038 699 ProSitePatterns ABC transporters family signature. 592 606 IPR017871 GO:0005524|GO:0016887
Gabi3277g00038 699 Pfam ABC transporter 473 620 IPR003439 GO:0005524
Gabi3277g00038 699 Gene3D ABC transporter type 1, transmembrane domain 121 439 IPR036640 GO:0005524|GO:0016020
Gabi3277g00038 699 PANTHER ABC TRANSPORTER B FAMILY 133 691 IPR039421 -
Gabi3277g00038 699 FunFam ABC transporter B family member 26, chloroplastic 120 439 - -
Gabi3277g00038 699 SUPERFAMILY ABC transporter transmembrane region 126 434 IPR036640 GO:0005524|GO:0016020
Gabi3277g00038 699 Pfam ABC transporter transmembrane region 146 405 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3277g00038 699 CDD ABC_6TM_TAP 141 428 - -
Gabi3277g00038 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 454 693 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00038 Gabi-Chr3277 373285 380426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00038 209 697 Calmodulin-binding Proteins AT2G36910 34.337 2.15e-72 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00038 - - vra:106777591 1148.65