Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00024 ATGGCTTCTCTTACTCAATTTTTCTCTCTTCTCATCCCTCTGCTGGCAACTTCATTTCTAAGTGTGTTTTCCTTTAAAGCTTCAATCCAAACAACTCACTTGGAACCTTTTAAATGCTCTGCAAAGATCAGAACATGCAATGCCTCACTCTACCACATAAACTACGATCTCAAGATAGAAGAAATAGCCAAGTTTTACACTGTTAATACCTCCCAAATCAAACCTATAATGCATGGCAACAAACAAGATTACCTCATAACAGTACCTTGTTCTTGCAACAACACCAATGGCCTTGGCGGATATTTCTATGATACAACCTACAAAGTGAAGCCTAATGACACTTTTGATGATATTAATACCATGATTTACAGTGGTCAAGCCTGGCCTATTGATAGAGTATTGATCCCAAACGAGAAGTTAACAATACATATTCCTTGTGGGTGTTCAGAAAGTGACTCTCAAATTGTTGTTACATATACAGTCCAGCCTAATGACACAACAGCAGCAATTGCTAATGAGCTAAATGCTACGGTTGTTGGCATGGTGAGTTTGAACGATGTTCTGGTTCAGAACCCCACATTCATAGATATTGGTTGGGTGCTATATGTTCCCGAGGAATTGAATGGGTTACCACTTTCCAACACAAAAGAAAAAAAACACAAGTGGGCAACAATCATTGGCATCTTAGCGGGTGTGACATTACTGTCAATTATTACCTTGATCATTCTCATTCTCAGTCTGAGTCTTAGGAGAAAGAAAGCCTATGAAACCAGCAAAGATGATCAAATCGCTGTCTCTAAAAGATCAATTGCCAATAGAACTATTTCCTTAAAGAATCGGGACTTTCACAAAGAATATATGGAAGGTAACTTGAGAAATTTTTATTGTTACTTATTCATGGTAAATATTGGCGCAGATGCAACATCATTTGACTCAGAAAGACCAGTAATTTATTCTCTTGAGGAGATTGAAGATGCTACGAATGACTTTGATGAAACTCGAAGGATTGGAGTTGGTGGATATGGGACTGTGTATTTTGGAATGTTAGGGCAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAACAAGTCCAAAGAATTTTATGCAGAACTCAAGGCCTTATGTAAGATCCATCATATTAACATTGTGGAGTTGTTGGGATATGCCAGTGGAGATGACCACCTTTATTTGGTGTACGAGTATGTTCCCAATGGATCTCTCAGTGAACATCTTCATGATCCATTACTGAAAGGTCACCAGTCTCTTTCTTGGTGTGCTAGGGTTCAGATTGCACTGGATGCAGCAAAAGGTCTTGAATACATACATGATTACACAAAAGCACGATATGTTCATCGGGATATAAAGACTAGTAATATTCTTCTTGATGAAAAGCTCAGAGCTAAGGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCGCCAGAATCTGTGAAGGAGCTTCAAGTGACCATAAAAACCGATGTATTTGCATTTGGAGTAGTTTTATCAGAGTTGATAACAGGGAAACGTGCAATATTTCGTGACAACCAAGAAGCCACCAAAACGAGATCACTCATTTCAGTTGTTAAGGATATATTCCAAGATGATGACACAGAGACTGTTTTAGAAGCTGCCGTAGATGGGAATCTTCAACGTAACTATCCTATGGAAGATGTCTTCAAGATGACAGAAATAGCTCATTGGTGCTTGTGCGAAGATCCATTGGACAGGCCTGAAATGAAGGAGATCGTTGTGGCATTGTCACAGATTGTGATGTCCTCGATAGAATGGGAAGCATCACTAGGCGGAGACAGCCAGGTTTTTAGCGGGGTATTTGATGGAAGATGA 1905 0.3963 MASLTQFFSLLIPLLATSFLSVFSFKASIQTTHLEPFKCSAKIRTCNASLYHINYDLKIEEIAKFYTVNTSQIKPIMHGNKQDYLITVPCSCNNTNGLGGYFYDTTYKVKPNDTFDDINTMIYSGQAWPIDRVLIPNEKLTIHIPCGCSESDSQIVVTYTVQPNDTTAAIANELNATVVGMVSLNDVLVQNPTFIDIGWVLYVPEELNGLPLSNTKEKKHKWATIIGILAGVTLLSIITLIILILSLSLRRKKAYETSKDDQIAVSKRSIANRTISLKNRDFHKEYMEGNLRNFYCYLFMVNIGADATSFDSERPVIYSLEEIEDATNDFDETRRIGVGGYGTVYFGMLGQKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQSLSWCARVQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRAIFRDNQEATKTRSLISVVKDIFQDDDTETVLEAAVDGNLQRNYPMEDVFKMTEIAHWCLCEDPLDRPEMKEIVVALSQIVMSSIEWEASLGGDSQVFSGVFDGR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00024 634 FunFam Kinase family protein 305 401 - -
Gabi3277g00024 634 ProSiteProfiles Protein kinase domain profile. 330 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00024 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Gabi3277g00024 634 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Gabi3277g00024 634 Pfam LysM domain 159 204 IPR018392 -
Gabi3277g00024 634 SUPERFAMILY LysM domain 157 204 IPR036779 -
Gabi3277g00024 634 CDD LysM 157 203 IPR018392 -
Gabi3277g00024 634 FunFam PTI1-like tyrosine-protein kinase 3 402 620 - -
Gabi3277g00024 634 Gene3D Phosphorylase Kinase; domain 1 308 401 - -
Gabi3277g00024 634 Gene3D LysM domain 150 209 IPR036779 -
Gabi3277g00024 634 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
Gabi3277g00024 634 Pfam Protein kinase domain 331 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00024 634 ProSiteProfiles LysM domain profile. 157 203 IPR018392 -
Gabi3277g00024 634 SMART serkin_6 330 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00024 634 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 34 630 IPR044812 GO:0019199|GO:0045087
Gabi3277g00024 634 SUPERFAMILY Protein kinase-like (PK-like) 313 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00024 Gabi-Chr3277 272840 276899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00024 310 634 Receptor kinase-like Gene Family AT1G51940 52.568 2.26e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3277g00024 Pkinase 3.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00024 - - gmx:100800907 954.125