Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00015 ATGTTCTTTCACTCTTTTGCATCGTTTCTGGTTATTTTACTTTGTCACCATGCACTTCCTCTTCTTGCTGATCCAAGAGCCACGGAGGCAGCAGTGTTATGCACCAACAGAACTGCTCCAATGCCTGACCCTCAAGTTTTGAAAGCAAATTTTTTTGATGCCTTGGAAGCATTGACCTCTCTGGTTACGAGACAAAGATATGCAGCTGTTGTTAAAGGGACTCAAAATGCCACCGTCTATGCTTTTGGCGAGTGCATGAAAGACCTTTCTCGACCAGATTGTGATGTCTGCTTTGCCAAGTGCAAGACACAGGTTCTCAGGTGCTCCCCATTTCAGAGAGGCATTCGTGGTGGCAGGCTTTTCTTTGATGGGTGCTATCTAAGGTACGATGACTACAACTTCTTCAATGAGAGTCTTAGTTTTCAAGACATGACAGTGTGTGGAACCAAAGATTTTACTGGGAATAGGACTGTTTATAAGGCCAATACTCTGGAGTTAGTGAGAAATTTGAGCATAGAAGCACCAAAGAGTGAAGGGTTCTTTGTGGGGTCTTTGAGTCGAAGGAATGTTACTGTTTATGGGTTGGCTCAATGTTGGAAATTTGTGAATGGCAATTCCTGCAAGAACTGTTTAGCTGAAGCTGTTACTAGGATTGATTCATGTACTCCAAGAGAAGAAGGGAGGGTATTGAATGCTGGATGTTACTTGAGGTATTCTAATCACAAGTTCTATAATAATTTAAGCAACGATACCCCTCTTCCTCGAGGAAATCAAGGAAGTAGAAATTTTGGTATCATTGTGGCTGCATCATCTTCCACCCTGGCTCTTCTGCTGATTGTTGCAACAGTTGTTTTCTTCATAAGGACAAATTTACTGAAGCGGAGGAGAGAAAGAAGACAGTTTGGTGCACTTTTGGACACAGTGAACAAGTCAAAACTAAATACGCCATATGAAATTCTTGAAAAAGCTACAAATTACTTCAGTGATTCAAATAAGCTAGGAGAAGGTGGATCAGGTTCAGTTTATAAAGGAGCTCTGCCAGATGGAAATACCGTGGCCATAAAAAGACTTAGCTTCAACACAACACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGGTCAGTGGCATTCATCACAAAAATCTAGTGAAGATTTTAGGGTGCAGCATTACAGGACCTGAAAGTCTTCTTGTTTATGAATACGTGCCTAATCTGAGCCTCCATGATCACCTATCTGTTAGAAGGAATTCTCAACAGTTGACATGGGAAATCAGGCATAAGATCATATTGGGAACGGCAGAAGGTTTGGCCTATCTTCATGAGGAATCACAAATGAGAATCATTCATAGAGATATAAAATTAAGCAACATTCTGCTTGATGATAACTTCACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGACAAGTCTCACCTCAGCACAGCCATTTGTGGCACACTGGGTTATATGGCTCCAGAGTATATAGTTCTAGGGAAGTTAACTGAGAAAGCTGATGTCTATAGTTTTGGAGTTTTAGTTATTGAAATTGTATCCGGCAAAAGAAGCAGATCCTTTGTTAAAGATTCAATTTCCATCTTACATACGGTTTGGAGCCTTTATGGATCAAATAGGCTATGTGACATTGTTGATCCAATCCTTGAGAGATTTTATCCGGTAGAGGAAGCATGCAAACTCCTTAAGATAGGGCTGCTTTGTGTACAAGCATCTGCAGAGCTACGACCACCAATGTCAGTAGTTGTAAAAATGATTGTTAACAATCATGAAGTTACTGAGCCAACACAACCACCGTTTCTTAGTTGTGGTAGTTCAGAATTCAGCAAATCTACTTTACCAGGAGATAGTTTTCAATCTGGATCCCACACTCAGTCTTCAGGGGACAGCATGACCAAAAGTATGATTGAGCATAGAAGGGACACACTATAA 1959 0.4068 MFFHSFASFLVILLCHHALPLLADPRATEAAVLCTNRTAPMPDPQVLKANFFDALEALTSLVTRQRYAAVVKGTQNATVYAFGECMKDLSRPDCDVCFAKCKTQVLRCSPFQRGIRGGRLFFDGCYLRYDDYNFFNESLSFQDMTVCGTKDFTGNRTVYKANTLELVRNLSIEAPKSEGFFVGSLSRRNVTVYGLAQCWKFVNGNSCKNCLAEAVTRIDSCTPREEGRVLNAGCYLRYSNHKFYNNLSNDTPLPRGNQGSRNFGIIVAASSSTLALLLIVATVVFFIRTNLLKRRRERRQFGALLDTVNKSKLNTPYEILEKATNYFSDSNKLGEGGSGSVYKGALPDGNTVAIKRLSFNTTQWADHFFNEVNLVSGIHHKNLVKILGCSITGPESLLVYEYVPNLSLHDHLSVRRNSQQLTWEIRHKIILGTAEGLAYLHEESQMRIIHRDIKLSNILLDDNFTPKIADFGLARLFPEDKSHLSTAICGTLGYMAPEYIVLGKLTEKADVYSFGVLVIEIVSGKRSRSFVKDSISILHTVWSLYGSNRLCDIVDPILERFYPVEEACKLLKIGLLCVQASAELRPPMSVVVKMIVNNHEVTEPTQPPFLSCGSSEFSKSTLPGDSFQSGSHTQSSGDSMTKSMIEHRRDTL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00015 652 SMART serkin_6 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00015 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 80 635 - -
Gabi3277g00015 652 MobiDBLite consensus disorder prediction 614 652 - -
Gabi3277g00015 652 FunFam Putative DUF26-domain receptor-like protein kinase family protein 286 402 - -
Gabi3277g00015 652 ProSiteProfiles Gnk2-homologous domain profile. 140 243 IPR002902 -
Gabi3277g00015 652 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Gabi3277g00015 652 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00015 652 CDD STKc_IRAK 333 595 - -
Gabi3277g00015 652 Gene3D Transferase(Phosphotransferase) domain 1 403 606 - -
Gabi3277g00015 652 Pfam Protein kinase domain 328 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00015 652 Gene3D Phosphorylase Kinase; domain 1 288 402 - -
Gabi3277g00015 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Gabi3277g00015 652 Gene3D - 142 243 IPR038408 -
Gabi3277g00015 652 Gene3D - 28 134 IPR038408 -
Gabi3277g00015 652 Pfam Salt stress response/antifungal 151 240 IPR002902 -
Gabi3277g00015 652 Pfam Salt stress response/antifungal 50 132 IPR002902 -
Gabi3277g00015 652 SUPERFAMILY Protein kinase-like (PK-like) 315 624 IPR011009 -
Gabi3277g00015 652 FunFam Cysteine-rich receptor-like protein kinase 3 143 243 - -
Gabi3277g00015 652 FunFam Cysteine-rich receptor-like protein kinase 2 403 603 - -
Gabi3277g00015 652 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Gabi3277g00015 652 FunFam Cysteine-rich receptor-like protein kinase 2 27 134 - -
Gabi3277g00015 652 MobiDBLite consensus disorder prediction 614 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00015 Gabi-Chr3277 178856 181642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00015 20 492 Receptor kinase-like Gene Family AT1G70530 59.705 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3277g00015 Pkinase 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00015 - - gmx:100802190 1038.87