Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00013 ATGAAGAAAATAGTCCCTCTCATCTCTTTTCAATACCTCTTTTTCCTTCTCACCAAGTTTCTATCACTATCAGAAACTGTAATGGCAGAACCAAGGGCCAAGACAGTCCTAATAACATGTGGACAGCAACTAGAGCACAACACCTCTATCTTTGTTCCAAATTTTGTTGCAACTATGGAGAACATCAGTGAACAGATGCGCAGTACTGGCTTTGGCACAGCAGTTACAGGCACAGGACCTGATACCAACTATGGCCTGGCTCAGTGCTATGGAGATCTTTCATTACTTGACTGTGTGTTATGTTATGCTGAGGCACGCACGGTTCTTCCACAGTGCTTCCCTTATAATGCTGGTCGCATTTACTTAGATGGTTGCTTCATGAGAGCTGGGAACTATAGTTTCTTTAATGAGTATAAAGGACCAGAAGACAGAGCTTTATGTGGGAACTCAACTAAGAAGAACTCAAGCTTTCAAGCAGCAGCAAAGCATGCTGTTTTAAGAGCAGTTCAAGATGCACCCAACAACAAAGGCTATGCTAGAGGGAAGGTTGCTGTATCAGGAACTGCAAACGAGTCTGCTTATGTTCTGGCTGATTGTTGGAGGAGTTTGGACACAAGCTCTTGCAAAGCGTGTCTTGAGAATGCATCTTCTTCCATATTGGGGTGCTTGCCTTGGTCAGAAGGGCGAGCACTCAACACCGGGTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACTGGGAAATGGGAGTTCAAGAGGTAATGTAGTAGTGATAGTTGTTGCAGTAGTCAGTTCGGTGATTGTTTCGGTGGTTGGAGTAGTTATTGGGGTTTATATATGGAAACAGAGATACATTCAAAAGAAACGAAGAGATTCAAATGATACAGAAAAGTTAGCAAAGACTCTTCAGCACAATAGCTTGAACTTCAAGTACTCTACATTGGAAAGGGCTACTGGATCTTTTCATGACAATAACAAGTTAGGACAAGGAGGATTTGGAACAGTTTACAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAACGAAGTCAACATAATTAGTAGTGTGGAACACAAGAATCTGGTCAGACTGTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTTCTTGTATATGAATTTCTGCCCAACAAAAGTCTTGATCGCTTCATTTTTGATAAAACAAAGGGCAAGGAACTGAACTGGGAAAAGAGATATGAAATTATCATCGGCACAGCTGAAGGATTAGTTTACCTGCACGAGAATTCCAAAATAAGGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGCTTCGTGCAAAAATTGCAGATTTTGGTTTGGCCAGATCCTTTCAGGAAGACAAGAGCCACATAAGTACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCGGAGTACCTAGCTCATGGCCAGTTAACAGAAAAAGCAGACATATATAGTTTTGGGGTGTTACTGCTAGAGATAGTTACTGGTAGACAGAACAACAGGAGCAAAGCATCAGAGTATTCAGACAGCTTAGTTACAGTGACATGGAAGCATTTTCAGTCAGGGGCTGCAGAACAATTATTTGATCCAAATCTAGAGTTGCAGGAGGACAACGATATCAATGTTAAGGATGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAAGTCCCTTCATTACGACCAACCATGTCAAAGGCACTACAGATGCTAACAAAGAAAGAGGAGCATCTTGCAGCTCCATCTAATCCACCCTTCCTAGATGAGAGTACCATGGAACTCCATGACACAAACGGTGACCCATTTTACCCTCCGAATGCAGCTGATTCAATTGCTACTATGTCCTATAGCTCTTTTCATCCCAGATGA 1953 0.4194 MKKIVPLISFQYLFFLLTKFLSLSETVMAEPRAKTVLITCGQQLEHNTSIFVPNFVATMENISEQMRSTGFGTAVTGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNAGRIYLDGCFMRAGNYSFFNEYKGPEDRALCGNSTKKNSSFQAAAKHAVLRAVQDAPNNKGYARGKVAVSGTANESAYVLADCWRSLDTSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKELGNGSSRGNVVVIVVAVVSSVIVSVVGVVIGVYIWKQRYIQKKRRDSNDTEKLAKTLQHNSLNFKYSTLERATGSFHDNNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKTKGKELNWEKRYEIIIGTAEGLVYLHENSKIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADIYSFGVLLLEIVTGRQNNRSKASEYSDSLVTVTWKHFQSGAAEQLFDPNLELQEDNDINVKDEILRVVHIGLLCTQEVPSLRPTMSKALQMLTKKEEHLAAPSNPPFLDESTMELHDTNGDPFYPPNAADSIATMSYSSFHPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00013 650 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00013 650 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Gabi3277g00013 650 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Gabi3277g00013 650 Gene3D Transferase(Phosphotransferase) domain 1 400 611 - -
Gabi3277g00013 650 SUPERFAMILY Protein kinase-like (PK-like) 308 626 IPR011009 -
Gabi3277g00013 650 SMART serkin_6 324 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00013 650 Gene3D - 145 244 IPR038408 -
Gabi3277g00013 650 Gene3D - 33 134 IPR038408 -
Gabi3277g00013 650 Pfam Salt stress response/antifungal 150 241 IPR002902 -
Gabi3277g00013 650 Pfam Salt stress response/antifungal 46 131 IPR002902 -
Gabi3277g00013 650 CDD STKc_IRAK 330 601 - -
Gabi3277g00013 650 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Gabi3277g00013 650 FunFam Putative DUF26-domain receptor-like protein kinase family protein 292 399 - -
Gabi3277g00013 650 FunFam Cysteine-rich receptor-like protein kinase 2 400 607 - -
Gabi3277g00013 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gabi3277g00013 650 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Gabi3277g00013 650 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Gabi3277g00013 650 Pfam Protein kinase domain 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00013 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 624 - -
Gabi3277g00013 650 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Gabi3277g00013 650 MobiDBLite consensus disorder prediction 608 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00013 Gabi-Chr3277 172182 176915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00013 1 650 Receptor kinase-like Gene Family AT1G70520 67.580 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3277g00013 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00013 - - gmx:100804094 1131.32