Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00011 ATGGATGAAATGTACGGAGTGCCGTCGACGGAGGAGGAGTATGACGACAAGGCCTTGATGACGCCGGAGAATCTGATCTTCCCGGCGGACTACCACAGCTTCTTCATGTCGACATCCGCCGCAGGCCGGATTCCTATGTTCGGATCCGACGACCTCATCTCCGCCGTCGCAACTCCCGCCGGGATTCAGCAGCAGGAGGACGAGATGGCCTCCGCGGTCATGAAGGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCAGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGTAAGAGGGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTGGTGAAATATAAATCAGACCTCGCTCGCCCTTTTGATGAAGCAACAACTTTCCTCAACAACATCGAAATGCAGCTCAGCCATCTCTCCACCGGTGCTTCCGTTCCCACCCTTTCTGACGATGGGGGTGTATCCTCGGACGAAGATTTTAGTACAGGCGATGGTGATGCTCAAGATGGACAATTAAGGAGTGAAGATCGTGAGCTCAAGGATAGGCTTTTACGAAAGTTTGGGAGTCACATTGGTTCTCTGAAATTGGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAACACTGTTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAAGTTAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATCTGACCGGACGGTTATTTGCTGATGAATGA 942 0.4968 MDEMYGVPSTEEEYDDKALMTPENLIFPADYHSFFMSTSAAGRIPMFGSDDLISAVATPAGIQQQEDEMASAVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKRDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNNIEMQLSHLSTGASVPTLSDDGGVSSDEDFSTGDGDAQDGQLRSEDRELKDRLLRKFGSHIGSLKLEFSKKKKKGKLPKEARQTLFQWWNVHYKWPYPTEADKIELAKLTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGRLFADE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00011 313 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Gabi3277g00011 313 Gene3D - 229 303 - -
Gabi3277g00011 313 SUPERFAMILY Homeodomain-like 231 302 IPR009057 -
Gabi3277g00011 313 Pfam Homeobox KN domain 250 289 IPR008422 GO:0003677|GO:0006355
Gabi3277g00011 313 ProSiteProfiles 'Homeobox' domain profile. 230 293 IPR001356 GO:0003677
Gabi3277g00011 313 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Gabi3277g00011 313 ProSitePatterns 'Homeobox' domain signature. 268 291 IPR017970 GO:0000981|GO:0006355
Gabi3277g00011 313 MobiDBLite consensus disorder prediction 179 207 - -
Gabi3277g00011 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 300 - -
Gabi3277g00011 313 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Gabi3277g00011 313 SMART ELK_2 210 231 IPR005539 GO:0003677
Gabi3277g00011 313 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
Gabi3277g00011 313 CDD homeodomain 242 294 IPR001356 GO:0003677
Gabi3277g00011 313 Pfam KNOX2 domain 126 171 IPR005541 GO:0003677|GO:0005634
Gabi3277g00011 313 SMART HOX_1 232 297 IPR001356 GO:0003677
Gabi3277g00011 313 Pfam ELK domain 210 231 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00011 Gabi-Chr3277 153971 161608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00011 1 313 Homeobox Transcription Factor Family AT1G23380 64.242 6.58e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi3277g00011 KNOX2 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00011 - - gmx:100794719 499.975