Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00008 ATGGAACTTAGTATTTCGGTTTTCTGGCTACCGGTTTTACTTCTTCTGGTGTTGATGAAGATTTCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTACGAAGTTGTAGCTCTTATGGCCATAAAGAATGAGTTGATTGATCCTCACAATGTCCTGGAGAATTGGGATATTAATTCTGTTGATCCCTGTAGCTGGAGGATGATTACTTGTTCTCAAGATGGCTCCGTTTCTGCATTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCTTGGATTGGAAACCTTACTAACTTACAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTCAGATTCCTGCTGCAATAGGAATCCTGGAAAAGCTTCAGACACTCGATCTCTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGCGGTTGAATAATAACAGCCTTTCAGGAGCCTGCCCTCAATCTCTTAGCAACATTGATGGTCTAACCCTCGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCAAGAATATCAGCAAGAACATTAAAATTTGTGGGTAACCCATTAATTTGTGGTCCAAAAGCAAACAACTGTTCTACTGTTCTACCAGAGCCACTTTCCTTTCCCCCAGATGCACTAAGAGCCCAATCAGACTCTGGTAAAAAAAGCCATAATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGTTGGGTTTCTCGTTTGGTGGCGGTATAGACACAACCAGCAGATTTTCTTTGATATTAATGAGCATTACGACCCAGAGGTGCGCCTAGGTCATTTAAAAAGATATTCGTTCAAAGAGCTCCGAGCTGCAACAGACCATTTCAACTCAAAGAATATTCTAGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCGTGCTTGAATGATGGGTCTGTTGTGGCGGTTAAAAGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAGACAGAAGTTGAGACAATAAGTTTGGCTGTTCACCGGAATCTTTTGAGGCTTTGCGGGTTTTGCAGTACTCAGAATGAAAGGCTCCTCGTTTATCCATACATGTCTAACGGCAGTGTAGCCTCTAGATTAAAAGACCATATTAATGGACGGCCAGCTTTAGATTGGACAAGGAGGAAGAAAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCCAAAATTATTCACCGTGATGTCAAAGCAGCAAACATATTGCTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTCGGTTTAGCTAAGCTTCTGGATCACAGAGACTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTACCTATCCACTGGCCAGTCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAAGCTCTAGATTTTGGGCGAGCTGCAAACCAGAAAGGTTAA 1548 0.4276 MELSISVFWLPVLLLLVLMKISSAALSPSGINYEVVALMAIKNELIDPHNVLENWDINSVDPCSWRMITCSQDGSVSALGLPSQNLSGTLSPWIGNLTNLQSVLLQNNAISGQIPAAIGILEKLQTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLSGACPQSLSNIDGLTLVDLSYNNLSGSLPRISARTLKFVGNPLICGPKANNCSTVLPEPLSFPPDALRAQSDSGKKSHNVALAFGASFGAAFVIVIIVGFLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMSNGSVASRLKDHINGRPALDWTRRKKIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00008 515 Gene3D Transferase(Phosphotransferase) domain 1 379 515 - -
Gabi3277g00008 515 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Gabi3277g00008 515 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Gabi3277g00008 515 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Gabi3277g00008 515 SMART serkin_6 302 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00008 515 SUPERFAMILY L domain-like 32 199 - -
Gabi3277g00008 515 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Gabi3277g00008 515 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Gabi3277g00008 515 FunFam Somatic embryogenesis receptor-like kinase 1 379 515 - -
Gabi3277g00008 515 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Gabi3277g00008 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Gabi3277g00008 515 Pfam Protein kinase domain 303 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00008 515 SUPERFAMILY Protein kinase-like (PK-like) 279 506 IPR011009 -
Gabi3277g00008 515 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 509 - -
Gabi3277g00008 515 ProSiteProfiles Protein kinase domain profile. 302 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00008 515 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00008 Gabi-Chr3277 87419 92928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00008 67 515 Receptor kinase-like Gene Family AT1G60800 78.982 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi3277g00008 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00008 - - gmx:100806943 937.562