Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00007 ATGGAACTTAGTATTTCGGTTTTCTGGCTACCGGTTTTACTTCTTCTGGTGTTGATGAAGATTTCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTACGAAGTTGTAGCTCTTATGGCCATAAAGAATGAGTTGATTGATCCTCACAATGTCCTGGAGAATTGGGATATTAATTCTGTTGATCCCTGTAGCTGGAGGATGATTACTTGTTCTCAAGATGGCTCCGTTTCTGCATTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCTTGGATTGGAAACCTTACTAACTTACAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTCAGATTCCTGCTGCAATAGGAATCCTGGAAAAGCTTCAGACACTCGATCTCTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGCGGTTGAATAATAACAGCCTTTCAGGAGCCTGCCCTCAATCTCTTAGCAACATTGATGGTCTAACCCTCGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCAAGAATATCAGCAAGAACATTAAAATTTGTGGGTAACCCATTAATTTGTGGTCCAAAAGCAAACAACTGTTCTACTGTTCTACCAGAGCCACTTTCCTTTCCCCCAGATGCACTAAGAGACTCTGGTAAAAAAAGCCATAATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGTTGGGTTTCTCGTTTGGTGGCGGTATAGACACAACCAGCAGATTTTCTTTGATATTAATGAGCATTACGACCCAGAGGTGCGCCTAGGTCATTTAAAAAGATATTCGTTCAAAGAGCTCCGAGCTGCAACAGACCATTTCAACTCAAAGAATATTCTAGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCGTGCTTGAATGATGGGTCTGTTGTGGCGGTTAAAAGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAGACAGAAGTTGAGACAATAAGTTTGGCTGTTCACCGGAATCTTTTGAGGCTTTGCGGGTTTTGCAGTACTCAGAATGAAAGGCTCCTCGTTTATCCATACATGTCTAACGGCAGTGTAGCCTCTAGATTAAAAGACCATATTAATGGACGGCCAGCTTTAGATTGGACAAGGAGGAAGAAAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCCAAAATTATTCACCGTGATGTCAAAGCAGCAAACATATTGCTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTCGGTTTAGCTAAGCTTCTGGATCACAGAGACTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTACCTATCCACTGGCCAGTCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAAGCTCTAGATTTTGGGCGAGCTGCAAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCATCAGGACGGAAGATTAAGTCAAATGGTAGATAAAGATTTAAAGGGAAATTTTGACCTGGTTGAATTGGAAGAAATGGTTCAGGTTGCACTCTTGTGTACACAATTTAATCCCTTACACCGTCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGAGGATGGCTTAGCTGAGAGATGGGAGACCTCACAGAGGATTGAAACACCAAGGTTCCGGTCTTGTGAGAACCCCCCTCAAAGATATTCAGATTTTATAGAGGAATCTTCACTCATTGTAGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1869 0.4264 MELSISVFWLPVLLLLVLMKISSAALSPSGINYEVVALMAIKNELIDPHNVLENWDINSVDPCSWRMITCSQDGSVSALGLPSQNLSGTLSPWIGNLTNLQSVLLQNNAISGQIPAAIGILEKLQTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLSGACPQSLSNIDGLTLVDLSYNNLSGSLPRISARTLKFVGNPLICGPKANNCSTVLPEPLSFPPDALRDSGKKSHNVALAFGASFGAAFVIVIIVGFLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMSNGSVASRLKDHINGRPALDWTRRKKIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLVELEEMVQVALLCTQFNPLHRPKMSEVLKMLEEDGLAERWETSQRIETPRFRSCENPPQRYSDFIEESSLIVEAMELSGPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00007 622 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Gabi3277g00007 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 582 - -
Gabi3277g00007 622 FunFam Somatic embryogenesis receptor kinase 1 268 375 - -
Gabi3277g00007 622 ProSiteProfiles Protein kinase domain profile. 299 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00007 622 FunFam Somatic embryogenesis receptor-like kinase 1 376 592 - -
Gabi3277g00007 622 SUPERFAMILY L domain-like 32 199 - -
Gabi3277g00007 622 SUPERFAMILY Protein kinase-like (PK-like) 276 573 IPR011009 -
Gabi3277g00007 622 Pfam Protein kinase domain 300 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00007 622 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Gabi3277g00007 622 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Gabi3277g00007 622 SMART serkin_6 299 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00007 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Gabi3277g00007 622 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Gabi3277g00007 622 Gene3D Transferase(Phosphotransferase) domain 1 376 591 - -
Gabi3277g00007 622 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Gabi3277g00007 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00007 Gabi-Chr3277 87419 93325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00007 67 622 Receptor kinase-like Gene Family AT1G60800 76.585 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi3277g00007 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00007 - - gmx:100806943 1129.39