Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3277g00006 ATGGAACTTAGTATTTCGGTTTTCTGGCTACCGGTTTTACTTCTTCTGGTGTTGATGAAGATTTCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTACGAAGTTGTAGCTCTTATGGCCATAAAGAATGAGTTGATTGATCCTCACAATGTCCTGGAGAATTGGGATATTAATTCTGTTGATCCCTGTAGCTGGAGGATGATTACTTGTTCTCAAGATGGCTCCGTTTCTGCATTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCTTGGATTGGAAACCTTACTAACTTACAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTCAGATTCCTGCTGCAATAGGAATCCTGGAAAAGCTTCAGACACTCGATCTCTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGCGGTTGAATAATAACAGCCTTTCAGGAGCCTGCCCTCAATCTCTTAGCAACATTGATGGTCTAACCCTCGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCAAGAATATCAGCAAGAACATTAAAATTTGTGGGTAACCCATTAATTTGTGGTCCAAAAGCAAACAACTGTTCTACTGTTCTACCAGAGCCACTTTCCTTTCCCCCAGATGCACTAAGAGCCCAATCAGACTCTGGTAAAAAAAGCCATAATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGTTGGGTTTCTCGTTTGGTGGCGGTATAGACACAACCAGCAGATTTTCTTTGATATTAATGAGCATTACGACCCAGAGGTGCGCCTAGGTCATTTAAAAAGATATTCGTTCAAAGAGCTCCGAGCTGCAACAGACCATTTCAACTCAAAGAATATTCTAGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCGTGCTTGAATGATGGGTCTGTTGTGGCGGTTAAAAGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAGACAGAAGTTGAGACAATAAGTTTGGCTGTTCACCGGAATCTTTTGAGGCTTTGCGGGTTTTGCAGTACTCAGAATGAAAGGCTCCTCGTTTATCCATACATGTCTAACGGCAGTGTAGCCTCTAGATTAAAAGACCATATTAATGGACGGCCAGCTTTAGATTGGACAAGGAGGAAGAAAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCCAAAATTATTCACCGTGATGTCAAAGCAGCAAACATATTGCTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTCGGTTTAGCTAAGCTTCTGGATCACAGAGACTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTACCTATCCACTGGCCAGTCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAAGCTCTAGATTTTGGGCGAGCTGCAAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCATCAGGACGGAAGATTAAGTCAAATGGTAGATAAAGATTTAAAGGGAAATTTTGACCTGGTTGAATTGGAAGAAATGGTTCAGGTTGCACTCTTGTGTACACAATTTAATCCCTTACACCGTCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGAGGATGGCTTAGCTGAGAGATGGGAGACCTCACAGAGGATTGAAACACCAAGGTTCCGGTCTTGTGAGAACCCCCCTCAAAGATATTCAGATTTTATAGAGGAATCTTCACTCATTGTAGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1878 0.4271 MELSISVFWLPVLLLLVLMKISSAALSPSGINYEVVALMAIKNELIDPHNVLENWDINSVDPCSWRMITCSQDGSVSALGLPSQNLSGTLSPWIGNLTNLQSVLLQNNAISGQIPAAIGILEKLQTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLSGACPQSLSNIDGLTLVDLSYNNLSGSLPRISARTLKFVGNPLICGPKANNCSTVLPEPLSFPPDALRAQSDSGKKSHNVALAFGASFGAAFVIVIIVGFLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMSNGSVASRLKDHINGRPALDWTRRKKIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLVELEEMVQVALLCTQFNPLHRPKMSEVLKMLEEDGLAERWETSQRIETPRFRSCENPPQRYSDFIEESSLIVEAMELSGPR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3277g00006 625 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
Gabi3277g00006 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 595 - -
Gabi3277g00006 625 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Gabi3277g00006 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Gabi3277g00006 625 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00006 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Gabi3277g00006 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 585 - -
Gabi3277g00006 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Gabi3277g00006 625 SUPERFAMILY L domain-like 32 199 - -
Gabi3277g00006 625 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Gabi3277g00006 625 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Gabi3277g00006 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Gabi3277g00006 625 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Gabi3277g00006 625 ProSiteProfiles Protein kinase domain profile. 302 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00006 625 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3277g00006 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3277g00006 Gabi-Chr3277 87419 93325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3277g00006 67 625 Receptor kinase-like Gene Family AT1G60800 76.274 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi3277g00006 Pkinase 4.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3277g00006 - - gmx:100806943 1138.25