Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi326g00002 | ATGGCTGTGGTGAAGGATCATGACACTGATGAAATTGGAAACGAGTTTCCAGTAGGAATGCGTGTTCTTGCTATTGATGATGACCCATTGAGCCTCTTCACTTTGCAGACTTTGCTCAGACGGTGTCAATATGATGTAACCGTGACCACAGATGCAGTATCAGCACTGAAGTTGTTGAAAGAAAAGAAAAGCAAGTTTGACCTGATAATCACCGAAGTCCACATGTCAGAAATGAATGGATTTAAGTTGCTTGAACTCATGCAATGTTGGAATTTGATGGACCAACCTGTCATATTGTCGTCTGAAGATAATGACCGAAACATGGTCATGAAAGGAATCAAACTTGGAGCTTGTGATTATCTGGCAAAACCTGTGAGAATCGAGGAGCTGCAAAACATATGGCTGCATGTAATTAGGAGTAAGAATATTAAGTCTCGAGTTATTTGGACCGAAGAGCTTCATCGTAGTTTTGTTGCTGCTGTTATTAAGCTAGGGGTTGACAAGGCAGTACCTAGAAAAATTCTTGAATTGATGAATGTTGAGAAGCAACTTACTAGGGAGCATGTGTCCAGCCATCTCCAGAAATATAGACTTCATCTTAAAAGGATTAGCTCTAAGTCAGCCCAACAAGTTGAATCCTTGCAATGGGGGAATCAGAGTAGCATTACAAATACTTATGGGGAAACAAATTTTCAAGGAAGGGATGACCAAAATCAGAATGATGTTATCTGTAGCTCAATAGACTCCCGGATTCCCTTGAATGGTGTTGTTGATTCAGAAGGGCATAGTCCAGTTGCAAAAGCTGCAAAGCTGGATAAATCTGAAATTCCTGCAAAGATTAAGTTGCTTCCGGATCCATGGACTCCTGAATCTGGATTAGTCACTGCTGCCCTCAAGATAAAGAGAGAACAGCTGAAAGCCAAATTCATAGATGATCTTAAGAAGTTGTATACATGA | 957 | 0.4054 | MAVVKDHDTDEIGNEFPVGMRVLAIDDDPLSLFTLQTLLRRCQYDVTVTTDAVSALKLLKEKKSKFDLIITEVHMSEMNGFKLLELMQCWNLMDQPVILSSEDNDRNMVMKGIKLGACDYLAKPVRIEELQNIWLHVIRSKNIKSRVIWTEELHRSFVAAVIKLGVDKAVPRKILELMNVEKQLTREHVSSHLQKYRLHLKRISSKSAQQVESLQWGNQSSITNTYGETNFQGRDDQNQNDVICSSIDSRIPLNGVVDSEGHSPVAKAAKLDKSEIPAKIKLLPDPWTPESGLVTAALKIKREQLKAKFIDDLKKLYT | 318 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi326g00002 | 318 | Gene3D | - | 18 | 141 | - | - | |
Gabi326g00002 | 318 | CDD | REC_typeB_ARR-like | 22 | 138 | - | - | |
Gabi326g00002 | 318 | ProSiteProfiles | Response regulatory domain profile. | 21 | 138 | IPR001789 | GO:0000160 | |
Gabi326g00002 | 318 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 144 | 199 | IPR006447 | GO:0003677 | |
Gabi326g00002 | 318 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 20 | 223 | IPR045279 | GO:0009736 | |
Gabi326g00002 | 318 | Pfam | Response regulator receiver domain | 22 | 132 | IPR001789 | GO:0000160 | |
Gabi326g00002 | 318 | SUPERFAMILY | Homeodomain-like | 144 | 202 | IPR009057 | - | |
Gabi326g00002 | 318 | SMART | REC_2 | 20 | 134 | IPR001789 | GO:0000160 | |
Gabi326g00002 | 318 | Gene3D | - | 142 | 204 | - | - | |
Gabi326g00002 | 318 | Pfam | Myb-like DNA-binding domain | 149 | 197 | IPR001005 | - | |
Gabi326g00002 | 318 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 141 | 201 | IPR017930 | - | |
Gabi326g00002 | 318 | FunFam | Two-component response regulator | 140 | 204 | - | - | |
Gabi326g00002 | 318 | SUPERFAMILY | CheY-like | 19 | 152 | IPR011006 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi326g00002 | Gabi-Chr326 | 5943 | 14358 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi326g00002 | 11 | 232 | Response Regulator Gene Family | AT4G31920 | 48.120 | 6.19e-70 | 225 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Gabi326g00002 | Response_reg | 8.4e-22 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi326g00002 | - | K14491 | mtr:25481957 | 228.794 |