Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi326g00001 ATGGCTGTGGTGAAGGATCATGACACTGATGAAATTGGAAACGAGTTTCCAGTAGGAATGCGTGTTCTTGCTATTGATGATGACCCATTGAGCCTCTTCACTTTGCAGACTTTGCTCAGACGGTGTCAATATGATGTAACCGTGACCACAGATGCAGTATCAGCACTGAAGTTGTTGAAAGAAAAGAAAAGCAAGTTTGACCTGATAATCACCGAAGTCCACATGTCAGAAATGAATGGATTTAAGTTGCTTGAACTCATGCAATGTTGGAATTTGATGGACCAACCTGTCATATTGTCGTCTGAAGATAATGACCGAAACATGGTCATGAAAGGAATCAAACTTGGAGCTTGTGATTATCTGGCAAAACCTGTGAGAATCGAGGAGCTGCAAAACATATGGCTGCATGTAATTAGGAGTAAGAATATTAAGTCTCGAGTTATTTGGACCGAAGAGCTTCATCGTAGTTTTGTTGCTGCTGTTATTAAGCTAGGGGTTGACAAGGCAGTACCTAGAAAAATTCTTGAATTGATGAATGTTGAGAAGCAACTTACTAGGGATCATGTGGCCAGCCATCTCCAGAAATATAGACTTCATCTTAAAAGGATTAGCTCTAAGTCAGCCCAACAAGTTGAATCCTTGCAATGGGGGAATCAGAGTAGCATTACAAATACTTATGGGGAAACAAATTTTCAAGGAAGGGATGACCAAAATCAGAATGATGTTATCTGTAGCTCAATAGACTCCCGGATTCCCTTGAATGGTGTTGTTGATTCAGAAGGGCATAGTCCA 792 0.4066 MAVVKDHDTDEIGNEFPVGMRVLAIDDDPLSLFTLQTLLRRCQYDVTVTTDAVSALKLLKEKKSKFDLIITEVHMSEMNGFKLLELMQCWNLMDQPVILSSEDNDRNMVMKGIKLGACDYLAKPVRIEELQNIWLHVIRSKNIKSRVIWTEELHRSFVAAVIKLGVDKAVPRKILELMNVEKQLTRDHVASHLQKYRLHLKRISSKSAQQVESLQWGNQSSITNTYGETNFQGRDDQNQNDVICSSIDSRIPLNGVVDSEGHSP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi326g00001 264 SUPERFAMILY Homeodomain-like 144 202 IPR009057 -
Gabi326g00001 264 FunFam Two-component response regulator 140 204 - -
Gabi326g00001 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 144 199 IPR006447 GO:0003677
Gabi326g00001 264 CDD REC_typeB_ARR-like 22 138 - -
Gabi326g00001 264 ProSiteProfiles Response regulatory domain profile. 21 138 IPR001789 GO:0000160
Gabi326g00001 264 Gene3D - 17 144 - -
Gabi326g00001 264 Pfam Myb-like DNA-binding domain 149 197 IPR001005 -
Gabi326g00001 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 201 IPR017930 -
Gabi326g00001 264 SMART REC_2 20 134 IPR001789 GO:0000160
Gabi326g00001 264 Pfam Response regulator receiver domain 22 132 IPR001789 GO:0000160
Gabi326g00001 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 215 IPR045279 GO:0009736
Gabi326g00001 264 SUPERFAMILY CheY-like 19 152 IPR011006 -
Gabi326g00001 264 Gene3D - 145 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi326g00001 Gabi-Chr326 601 2488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi326g00001 11 232 Response Regulator Gene Family AT4G31920 47.368 1.26e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi326g00001 Response_reg 5.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi326g00001 - K14491 mtr:25481957 228.794