Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00047 ATGTTGCACTGTCTGAACACTTCGGGAAATCTAGATGGGAGCGGCTCCGACATGACAGTGATGGAAAGGCAAAGGGCAAGGATGAAGTGGCAACAAGAACGAGGATACTTCTCTGCAACTATGTTCTCTTCTAATTCTCAGGATTCTGAGGGGTCCATCATGATCGCTGCTGATTCCGCTTCTTCACTTGCTCAGGTTGTGGCTCAGGCTCACTCAATGAAGCCTGACCCAATATTCCACAACTTTGAGGCTGGCTTTGATGTCAATTCTGCAATTTCAAGGACTTATAGCTGTCCTCCTTCTCTGGCAGAACCCAAAGGCACAGACTTGTCAATTGGGAAAGACAGTTCTAAGAAGAGGAAAACTGACAAGGCTCAGAATCCCAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAGGTAGGTGGTGCTGACGATGGGGAATCCAAAATCACAGGCAAGACCAGCACAAAGAATAACACAACAACCGCAGATAGCAACAACAACAACAGAGAAACTTGTGGAGAACATTCAAATTCAAAAGCTTCCGAGGTTGAAAAGCCTGACTATATTCATGTCCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTACAAGATTTAGTACCCGGTTGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAATTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTGAACCCGAGGCTTGACTTCAATATTGATGATGTGTTTGACAAAGAGGTGTTTTCTGCTTGTGCTGCTACTTTTCCAACCATAGGGATGTCATCACAGATGTCTAACCCTTCTTATCTTCAGTTCAATTCACCACAGCAAATTGTTCCGTGTGGTGGATTAGATATGACGATGAGCACTTCAGATGTGGGGCTCAGAAGGACCATAAGTGCTCCTGTATCGATGCCTGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTTTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTACAATGTGGCTTTTGATCAAGCCCCAGCAACATCCTTTCCTCATCAGCTATTCACTGGTCTAGTTGAAGCTAGCAATCTAAATATGGACATGTAG 1191 0.4341 MLHCLNTSGNLDGSGSDMTVMERQRARMKWQQERGYFSATMFSSNSQDSEGSIMIAADSASSLAQVVAQAHSMKPDPIFHNFEAGFDVNSAISRTYSCPPSLAEPKGTDLSIGKDSSKKRKTDKAQNPKVVAENDNKDKRIKVGGADDGESKITGKTSTKNNTTTADSNNNNRETCGEHSNSKASEVEKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDVFDKEVFSACAATFPTIGMSSQMSNPSYLQFNSPQQIVPCGGLDMTMSTSDVGLRRTISAPVSMPETFLDSSCFTQILPSSTWEGDFQNLYNVAFDQAPATSFPHQLFTGLVEASNLNMDM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00047 396 MobiDBLite consensus disorder prediction 99 189 - -
Gabi3269g00047 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 251 IPR011598 GO:0046983
Gabi3269g00047 396 MobiDBLite consensus disorder prediction 155 178 - -
Gabi3269g00047 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 270 IPR036638 GO:0046983
Gabi3269g00047 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 99 303 IPR024097 GO:0006355
Gabi3269g00047 396 SMART finulus 207 257 IPR011598 GO:0046983
Gabi3269g00047 396 FunFam Basic helix-loop-helix transcription factor 198 270 - -
Gabi3269g00047 396 CDD bHLH_AtBPE_like 191 276 - -
Gabi3269g00047 396 Gene3D - 198 272 IPR036638 GO:0046983
Gabi3269g00047 396 MobiDBLite consensus disorder prediction 111 149 - -
Gabi3269g00047 396 Pfam Helix-loop-helix DNA-binding domain 205 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00047 Gabi-Chr3269 377187 379801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00047 17 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.379 7.34e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3269g00047 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00047 - - gmx:100819517 503.827