Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00043 ATGGCTTCTGGAGATATTGAGTACCGATGCTTTGTTGGTGGGCTAGCATGGGCCACCGACAACGATGCTCTTGAGAAAGCCTTCTCTCCCTACGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAGACTGGAAGGTCGAGGGGGTTTGGATTTGTGACCTTCGCATCGGAGCAGACTATGAGGGATGCCATTGAAGGAATGAATGGAGGGTACAGTCGCGGCGGAGGAGGCGGATACGGAGGGGGTGGCCGTCGTGAAAGTGGTGGCTACAGCCGCAACGGTGGCGGAGGCTACGGCGGCGGTGGCTACGGAGGCGGTGGCTACGGAGGAGGTGGTTATGGCGGTGGGCGAGACCGTGGATACGGAGAGCGTGGTTACGGAGACGGTGGGTCCCGCTACTCAAAGGGAGGTGGTGTTTCGGATGGAAACTGGAGGAATTAA 447 0.5817 MASGDIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQTMRDAIEGMNGGYSRGGGGGYGGGGRRESGGYSRNGGGGYGGGGYGGGGYGGGGYGGGRDRGYGERGYGDGGSRYSKGGGVSDGNWRN 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00043 148 SUPERFAMILY RNA-binding domain, RBD 8 76 IPR035979 GO:0003676
Gabi3269g00043 148 SMART rrm1_1 9 88 IPR000504 GO:0003723
Gabi3269g00043 148 MobiDBLite consensus disorder prediction 119 148 - -
Gabi3269g00043 148 MobiDBLite consensus disorder prediction 76 98 - -
Gabi3269g00043 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 73 IPR000504 GO:0003723
Gabi3269g00043 148 PANTHER GEO13361P1-RELATED 7 71 - -
Gabi3269g00043 148 Gene3D - 2 111 IPR012677 -
Gabi3269g00043 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00043 Gabi-Chr3269 341972 343159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00043 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 40.506 3.70e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00043 - K13195 qsa:O6P43_001900 129.798