Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00042 ATGGCTTCTGGAGATATTGAGTACCGATGCTTTGTTGGTGGGCTAGCATGGGCCACCGACAACGATGCTCTTGAGAAAGCCTTCTCTCCCTACGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAGACTGGAAGGTCGAGGGGGTTTGGATTTGTGACCTTCGCATCGGAGCAGACTATGAGGGATGCCATTGAAGGAATGAATGGTCAGAACCTTGATGGCCGCAATATTACTGTGAACGAGGCTCAGTCCCGTGGAAGGGGCGGAGGCGGATACGGAGGGGGTGGCCGTCGTGAAAGTGGTGGCTACAGCCGCAACGGTGGCGGAGGCTACGGCGGCGGTGGCTACGGAGGCGGTGGCTACGGAGGAGGTGGTTATGGCGGTGGGCGAGACCGTGGATACGGAGAGCGTGGTTACGGAGACGGTGGGTCCCGCTACTCAAAGGGAGGTGGTGTTTCGGATGGAAACTGGAGGAATTAA 486 0.5741 MASGDIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQTMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGYGGGGRRESGGYSRNGGGGYGGGGYGGGGYGGGGYGGGRDRGYGERGYGDGGSRYSKGGGVSDGNWRN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00042 161 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gabi3269g00042 161 Gene3D - 2 123 IPR012677 -
Gabi3269g00042 161 MobiDBLite consensus disorder prediction 124 161 - -
Gabi3269g00042 161 MobiDBLite consensus disorder prediction 68 111 - -
Gabi3269g00042 161 CDD RRM2_NsCP33_like 9 84 - -
Gabi3269g00042 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gabi3269g00042 161 PANTHER GEO13361P1-RELATED 7 151 - -
Gabi3269g00042 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gabi3269g00042 161 SUPERFAMILY RNA-binding domain, RBD 8 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00042 Gabi-Chr3269 341972 343159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00042 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 9.20e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00042 - K13195 ccaj:109800681 162.925