Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00041 ATGGCTTCTGGAGATATTGAGTACCGATGCTTTGTTGGTGGGCTAGCATGGGCCACCGACAACGATGCTCTTGAGAAAGCCTTCTCTCCCTACGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAGACTGGAAGGTCGAGGGGGTTTGGATTTGTGACCTTCGCATCGGAGCAGACTATGAGGGATGCCATTGAAGGAATGAATGGTCAGAACCTTGATGGCCGCAATATTACTGTGAACGAGGCTCAGTCCCGTGGAAGGGGCGGTGGAGGCGGATACGGAGGGGGTGGCCGTCGTGAAAGTGGTGGCTACAGCCGCAACGGTGGCGGAGGCTACGGCGGCGGTGGCTACGGAGGCGGTGGCTACGGAGGAGGTGGTTATGGCGGTGGGCGAGACCGTGGATACGGAGAGCGTGGTTACGGAGACGGTGGGTCCCGCTACTCAAAGGGAGGTGGTGTTTCGGATGGAAACTGGAGGAATTAA 489 0.5746 MASGDIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQTMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGYGGGGRRESGGYSRNGGGGYGGGGYGGGGYGGGGYGGGRDRGYGERGYGDGGSRYSKGGGVSDGNWRN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00041 162 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gabi3269g00041 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gabi3269g00041 162 MobiDBLite consensus disorder prediction 68 112 - -
Gabi3269g00041 162 Gene3D - 2 106 IPR012677 -
Gabi3269g00041 162 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Gabi3269g00041 162 PANTHER GEO13361P1-RELATED 7 152 - -
Gabi3269g00041 162 CDD RRM2_NsCP33_like 9 84 - -
Gabi3269g00041 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gabi3269g00041 162 MobiDBLite consensus disorder prediction 125 162 - -
Gabi3269g00041 162 FunFam Glycine-rich RNA-binding protein GRP1A 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00041 Gabi-Chr3269 341972 343159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00041 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 1.06e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00041 - K13195 ccaj:109800681 162.925