Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00030 ATGTCCGTAACGGAACTGAAGGAGCGTCACTTGGCGGCGACGGAGACGGTCAACAATCTCAGGGAGCGCTTGAAGCAGAGGCGACTTTCTTTGCTTGATACAGATAGTGACTCTCAAGGTAGAACTCCTGTCACCTTTGGACCTACCGATCTCGTTTGCTGTAGAACGCTCCAGGGTCACACAGGAAAGGTGTACTCATTGGATTGGACGTCAGAAAAGAATCGAATTGTAAGCGCATCCCAAGACGGCCGATTAATAGTGTGGAATGCTCTAACAAGCCAGAAAACTCATGCCATAAAGCTTCCTTGTGCATGGGTCATGACCTGTGCTTTCTCACCTACTGGTCAATCTGTTGCATGCGGTGGCCTTGATAGTATTTGCTCTATTTTTAATCTTAATTCTCCCACTGACAGGGATGGGAATCTAACTGTTTCACGGATGCTTACTGGACATAAAGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGACACTCATTTAATTACTGGTTCTGGTGATCAGACGTGCATATTGTGGGATATTACTACTGGCCTTAGAACATCTGTTTTTGGAGGTGAATTTCAGTCTGGACATACCGCAGACGTACTTAGCATTTCTATTAATGGATCCAACTCTAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCCCGATTGTGGGACACTCGTGTGGCAAGTCGAGCAGTGCGGACATTCCATGGGCATGAGGGAGATGTTAATGCTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGCTCAGATGATGGAACTTGCAGATTGTTTGACATTAGGACTGGGCACCAACTTCAAGTATATTATCAGCAGCACAGTGACAATGACATCGCGCATGTGACCTCCATCGCATTCTCTATATCTGGAAGACTTCTTTTTGCTGGATATACAAATGGGGATTGCTATGTTTGGGATACTTTATTGGCAAAGGTAGTCTTGAATTTAGGATCTCTCCAAAACTCTCATGAGGGCAAGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCTTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGCGGGCATAGGAGGGTGCTTTGA 1122 0.4465 MSVTELKERHLAATETVNNLRERLKQRRLSLLDTDSDSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSICSIFNLNSPTDRDGNLTVSRMLTGHKGYVSSCQYVPDEDTHLITGSGDQTCILWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNDIAHVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGKISCLGLSADGSALCTGSWDTNLKIWAFGGHRRVL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00030 373 PRINTS G protein beta WD-40 repeat signature 216 230 IPR020472 -
Gabi3269g00030 373 PRINTS G protein beta WD-40 repeat signature 168 182 IPR020472 -
Gabi3269g00030 373 PRINTS G protein beta WD-40 repeat signature 76 90 IPR020472 -
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 373 - -
Gabi3269g00030 373 Pfam WD domain, G-beta repeat 335 364 IPR001680 GO:0005515
Gabi3269g00030 373 Pfam WD domain, G-beta repeat 53 89 IPR001680 GO:0005515
Gabi3269g00030 373 Pfam WD domain, G-beta repeat 283 319 IPR001680 GO:0005515
Gabi3269g00030 373 Pfam WD domain, G-beta repeat 197 229 IPR001680 GO:0005515
Gabi3269g00030 373 Pfam WD domain, G-beta repeat 146 181 IPR001680 GO:0005515
Gabi3269g00030 373 Pfam WD domain, G-beta repeat 237 272 IPR001680 GO:0005515
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 231 - -
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 185 - -
Gabi3269g00030 373 SUPERFAMILY WD40 repeat-like 50 364 IPR036322 GO:0005515
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Gabi3269g00030 373 PIRSF GNBP_B 1 367 - -
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 364 IPR001680 GO:0005515
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 238 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 92 131 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 275 319 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 141 181 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 188 229 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 50 89 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 325 365 IPR001680 GO:0005515
Gabi3269g00030 373 SMART WD40_4 233 272 IPR001680 GO:0005515
Gabi3269g00030 373 FunFam Guanine nucleotide-binding protein subunit beta 2 365 - -
Gabi3269g00030 373 CDD WD40 53 365 - -
Gabi3269g00030 373 PRINTS Beta G protein (transducin) signature 57 73 IPR001632 -
Gabi3269g00030 373 PRINTS Beta G protein (transducin) signature 76 90 IPR001632 -
Gabi3269g00030 373 PRINTS Beta G protein (transducin) signature 95 110 IPR001632 -
Gabi3269g00030 373 PRINTS Beta G protein (transducin) signature 113 130 IPR001632 -
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 276 - -
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Gabi3269g00030 373 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 365 IPR016346 GO:0007165
Gabi3269g00030 373 Coils Coil 3 23 - -
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Gabi3269g00030 373 ProSitePatterns Trp-Asp (WD) repeats signature. 168 182 IPR019775 -
Gabi3269g00030 373 Gene3D - 3 365 IPR015943 GO:0005515
Gabi3269g00030 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 190 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00030 Gabi-Chr3269 256772 261411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00030 88 366 U-box Gene Family AT1G04510 23.565 2.79e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00030 K04536 - gmx:100811645 728.013