LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3269g00026	ATGGCTTCAAATTCAGATTCCGAATCCCCACCTCCAACCGATTCATCTTCATCGCAATCACCGCCACCTCCACCGTCCGACGATAGTTCCTCATCGCCGCCACCGCCGTCCTCCCCATCTCCCCCACCATCATCATCTCCGCCGCCTTCATCTCCGCCTTCATCTCCGCCTCCATCATCGCCACCTCCGTCGTCACCTCCTCCGTCATCACCGCCGCCACCAGATGATCAGAAATCTCCACCCCCGCCATCTGACTCTTCCCCATCTCCACCACCGCCATCGGACTCTTCCCCATCTCCACCCAATCACCCGCCGCCGCCGCCGCCACCTCCACCTCCGCCACGGTCAGAAGTGTTTTCTCCTCCTCCGCCGCCACGTCATCGATTGTCTCCACCAAGGTCATCACAGTCAAGTAACTCTGATACACCTGAGGACAGTGGGAGCGGAATGAGCATGTCCGCTATAATAGGAGTTGCAGCTGGAGCTGGGTTATTGCTCCTTGTCATTATACTAATCATCGTTGCATGTTCAAGAAGGAAGAAGAAATCACAGCCTCCTATACGTTACTTCGCTAACCAAGCTGCTGGCGCTCCAAATCAGTATGGGTACAATAACGGTGAACTTGTTCTTAATATTCCTCCACCGCCAGGTGCAGGTTGGGGAGCACATGCAGCTGCTCCACCCCTACCTCCTCAGCGGGTGAGTAGTGACTTGAGCAACTCGAGTTTCTCCGGCTCCCATGGTCCGGTGTTGCCACCCCCACACCCTACGGTGGCCCTTGGATTCAATCAGAGCTCCTTCACGTTTGAAGAGCTATCAGCTGCCACTGGTGGGTTTTCCCAACGCAACCTACTTGGTCAAGGTGGATTCGGATATGTACACAAAGGTGTTCTACCCAATGGGAAGGAGATAGCGGTGAAGAGCCTCAAATCCACTGGGGGCCAAGGAGACAGAGAATTCCAAGTAGAGGTTGATATTATAAGCCGTGTCCATCATCGCTATCTTGTGTCACTTGTTGGGTATTGCATTTCAGACAGCAAAAAGCTTCTGGTGTATGAATTTGTGCCTAACAAAACCCTTCAATACCACCTCCATGGAAAGGATCGACCTGTCATGGATTGGGGCACCAGGCTCAAAATTGCAATTGGATCAGCCAAAGGACTTGCTTACTTGCATGAGGATTGTCACCCTCGCATCATTCACCGAGACATAAAGGGTGCAAACATACTACTCGAAGACAACTTCGAAGCCAAAGTGGCAGATTTTGGATTGGCAAAGTTTAATCAAGACACCAACACTCATGTTTCTACTCGCGTGATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAGTCTGATGTCTTCTCGTTCGGTATTATGCTTTTGGAGCTAATAACAGGACGACCCCCAGTGGCCAACACCGGTGATTATGAAGAGGATAGTTTGGTTGACTGGGCTAGACCACTTTGTACGAAGGCAATGGAAAATGGAACCTTTGACGGAGTGGTTGATCCACGTTTAGAGGACAATTATGACAAGCAGGAATTGGCACGTATGGTGTCTTGTGCTGCTGCTAGCGTTAGGCACTCAGCAAGGAGACGCCCAAAAATGAGCCAGATTGTAAGAGTACTGGAGGGTGATGTCTCACTAGATGTCCTTAATCAAGATGGAGTGAAACCTGGCCAAAGTGCACAGTTCGGCACCACAAGCGGTGAATATGCTGCTGGCGCATATAGTGCTGACATGAAAAGGTTCAGGAAAATAGCATTTGATAGCGGCAATGGAAGCAGTGAGTACGGAGGAACAACAAGTGAGTATGGACTAAACCCTTCCACCTCAAGCAGTGATCGATCATCTATTGAATATGGCAGCAGGAAGACAGGAAGCGCCCAGATGCACACTCCTTGA	1932	0.5057	MASNSDSESPPPTDSSSSQSPPPPPSDDSSSSPPPPSSPSPPPSSSPPPSSPPSSPPPSSPPPSSPPPSSPPPPDDQKSPPPPSDSSPSPPPPSDSSPSPPNHPPPPPPPPPPPRSEVFSPPPPPRHRLSPPRSSQSSNSDTPEDSGSGMSMSAIIGVAAGAGLLLLVIILIIVACSRRKKKSQPPIRYFANQAAGAPNQYGYNNGELVLNIPPPPGAGWGAHAAAPPLPPQRVSSDLSNSSFSGSHGPVLPPPHPTVALGFNQSSFTFEELSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQVEVDIISRVHHRYLVSLVGYCISDSKKLLVYEFVPNKTLQYHLHGKDRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLEDNFEAKVADFGLAKFNQDTNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGIMLLELITGRPPVANTGDYEEDSLVDWARPLCTKAMENGTFDGVVDPRLEDNYDKQELARMVSCAAASVRHSARRRPKMSQIVRVLEGDVSLDVLNQDGVKPGQSAQFGTTSGEYAAGAYSADMKRFRKIAFDSGNGSSEYGGTTSEYGLNPSTSSSDRSSIEYGSRKTGSAQMHTP	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3269g00026	643	SUPERFAMILY	Protein kinase-like (PK-like)	259	552	IPR011009	-
	Gabi3269g00026	643	ProSitePatterns	Protein kinases ATP-binding region signature.	285	307	IPR017441	GO:0005524
	Gabi3269g00026	643	ProSiteProfiles	Protein kinase domain profile.	279	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3269g00026	643	Gene3D	Phosphorylase Kinase; domain 1	256	354	-	-
	Gabi3269g00026	643	FunFam	Proline-rich receptor-like protein kinase PERK1	355	563	-	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	131	149	-	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	603	643	-	-
	Gabi3269g00026	643	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	161	602	IPR047117	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	1	149	-	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	601	643	-	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	233	247	-	-
	Gabi3269g00026	643	FunFam	proline-rich receptor-like protein kinase PERK1	257	354	-	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	15	130	-	-
	Gabi3269g00026	643	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	399	411	IPR008271	GO:0004672\|GO:0006468
	Gabi3269g00026	643	Gene3D	Transferase(Phosphotransferase) domain 1	355	563	-	-
	Gabi3269g00026	643	Pfam	Protein tyrosine and serine/threonine kinase	282	550	IPR001245	GO:0004672\|GO:0006468
	Gabi3269g00026	643	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	104	114	-	-
	Gabi3269g00026	643	MobiDBLite	consensus disorder prediction	221	248	-	-
	Gabi3269g00026	643	SMART	serkin_6	279	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3269g00026	Gabi-Chr3269	214153	217783	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3269g00026	143	629	Trihelix Transcription Factor Family	AT1G70460	50.905	4.32e-158	469

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Gabi3269g00026		PK_Tyr_Ser-Thr	2.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3269g00026	-		-	gmx:100806299	770