Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00012 ATGGAGGATGGTGATAAACCGGAGGGTAACTCCCATGGTAATTCTGATATGGAGGTTGTTGATGCCACTTTGCCACACCAACATTCAAACAAGGATCAAAATATGGATTCCTCTCCTCACGCGCCCGTTCCCAATTCCCCTACTACTCAGCTACAACAGGATCAAGTAATGGTTGATCAGGGTGATGATAACAAAAATGCCGATTCTACTCCTAGTCATATGCCAGAAACCAAAATAATTTGTGAGAATCAGCTTGAAGATGCTAAAACAGTTTCGCAACAGGAACTAATAACTCCAAAGCCTAAAGAAAAGAATGTCAGGGAAATGAAGAACGTGCTGAATGATACTGAGATGACCGATTATGATGAGTCTGGTACGAGTCTGGACCGAGAAACATTTATGAAAGAGCTGGAGAATTTCTACAGAGAGAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTATGGAGAGCTGTTATCAAACTAGGTGGCTATGATGTGGTAACTGCGTCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCTAAGACTTGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCATTGTTAGAGTATGAAAAGCATAAGAGAGAGATTGGAGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTACAAGTGTGGAAAAAGAGACCACTGTTTACCAGGCTCCAGGCTCTGGTAGGGCGCGAAGGGATGCGGCAGCACGTGCGATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTCAAAAGTATCGGTGTGATTAATAAACAGAAGACACCATCTGGTTTGGAGCATGCTGAGAAAGCTGCAAATATCGAAGGAGATAGACAATTGGTTACTGCAGTAGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTCTGCCAGAACAGGTTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGCCTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTATGA 1284 0.4502 MEDGDKPEGNSHGNSDMEVVDATLPHQHSNKDQNMDSSPHAPVPNSPTTQLQQDQVMVDQGDDNKNADSTPSHMPETKIICENQLEDAKTVSQQELITPKPKEKNVREMKNVLNDTEMTDYDESGTSLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQSTSVEKETTVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGVINKQKTPSGLEHAEKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEQVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00012 427 Gene3D - 128 225 IPR036431 GO:0003677
Gabi3269g00012 427 CDD ARID 129 214 - -
Gabi3269g00012 427 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 326 427 IPR002068 -
Gabi3269g00012 427 MobiDBLite consensus disorder prediction 26 75 - -
Gabi3269g00012 427 Gene3D - 324 426 IPR008978 -
Gabi3269g00012 427 Pfam ARID/BRIGHT DNA binding domain 130 214 IPR001606 GO:0003677
Gabi3269g00012 427 ProSiteProfiles ARID domain profile. 127 218 IPR001606 GO:0003677
Gabi3269g00012 427 SUPERFAMILY ARID-like 116 224 IPR036431 GO:0003677
Gabi3269g00012 427 SUPERFAMILY HSP20-like chaperones 335 422 IPR008978 -
Gabi3269g00012 427 SMART ARID_2 124 214 - -
Gabi3269g00012 427 FunFam AT-rich interactive domain-containing protein 3 318 426 - -
Gabi3269g00012 427 MobiDBLite consensus disorder prediction 1 75 - -
Gabi3269g00012 427 FunFam AT-rich interactive domain-containing protein 3 127 226 - -
Gabi3269g00012 427 CDD ACD_sHsps_p23-like 342 421 - -
Gabi3269g00012 427 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 30 424 IPR045147 GO:0006357
Gabi3269g00012 427 SMART bright_3 128 219 IPR001606 GO:0003677
Gabi3269g00012 427 Pfam Hsp20/alpha crystallin family 342 423 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00012 Gabi-Chr3269 90477 97742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00012 31 424 ARID Transcription Factor Family AT1G76510 60.723 1.39e-161 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi3269g00012 HSP20 0.00021 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00012 - - gmx:100797486 691.034