Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00009 ATGGCATACCAATCGATTCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAACTATTGAACTCTCCTTTTGGCGACACCACTTATACCAAGGTCTTCGTTGGAGGATTGGCTTGGGAGACTCAGAGCGAAACCATGCGCCGTTACTTCGAGCAGTTTGGAGAGATTCTCGAGGCCGTCGTAATCACTGATAAGAATACAGGGCGATCCAAAGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCCTGTGCTGATCCTACACCGGTCATTGATGGTAGAAGGGCAAATTGTAACTTGGCTTCTCTTGGCCGACCACGGCCCCCTCTCCCTTATGGACGGATAAGACCAGCGTCCCCTTATGTTGGAAGTTTGCAACCAGCCCGAGGTGCTTATGTTGGAGGCTTTGGCTACCAGCAACCGCTTTCCTATGGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACGACATATGGACCCGAATACATCTACCCACAGAATCTGTACAACCCATATATGGGTCAACAGTACCTTCAGATATATGGAGTGCCTGGAGCAGTTAATACAACTATTTATCCTTATGGACAATTGGGTCAAACTATTCCCAGCGGTCATGGTTATACAGCAATGCAGGGCTATACAGTACCTGGTCATCAGATTGTGCCCTACGGTGGATCCAATGTTAATGCCATGACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGAATTGCTGCACAAGTTCCAGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCAGTTTATGCAAGGCAGCGGTCCTGACCAAACGGCCGGGTATCCTTAGTTTGCAGCAGGACTAAGAGCAGTGGATCTGCTACTTGAGTGGCGGGCTTCCAATCTAGCCTTGCAAGTCATATATAGTCATGCTCACCAAGTTGTGTCTGTCGCTCCAGATGGTGAAGGAAACTGGAACGTGCGGGCTGTTTCCATTTGGACGTTTACACTAGTGTATTTATACCTTATACTACCAGTACTCAGGAAGAGTGGCGGTAGTATTGGATCAATGGTTGCTGGAATAGGTTTCTGGCATCCATGTAGGAATAAACTTGTGTAA 1128 0.4814 MAYQSIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSLQPARGAYVGGFGYQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQNLYNPYMGQQYLQIYGVPGAVNTTIYPYGQLGQTIPSGHGYTAMQGYTVPGHQIVPYGGSNVNAMTTSPMPAIQAPYPRIAAQVPGQPQFIVPAPSQFMQGSGPDQTAGYPXFAAGLRAVDLLLEWRASNLALQVIYSHAHQVVSEXAPDGEGNWNVRAAXSIWTFTLVYLYLILPVLRKSGGSIGSMVAGIGFWHPCRNKLV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00009 377 SUPERFAMILY RNA-binding domain, RBD 31 143 IPR035979 GO:0003676
Gabi3269g00009 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Gabi3269g00009 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Gabi3269g00009 377 PANTHER BOULE-RELATED 9 253 - -
Gabi3269g00009 377 SMART rrm1_1 33 105 IPR000504 GO:0003723
Gabi3269g00009 377 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Gabi3269g00009 377 CDD RRM_RBM24_RBM38_like 32 107 - -
Gabi3269g00009 377 Gene3D - 4 116 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00009 Gabi-Chr3269 57114 62523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00009 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 1.60e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00009 - - gmx:100779244 506.138