Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00004 ATGTCGTCTGGATCTGACATGGGCAACACAAACAGAGACCAATTCAGCGTTGGGATTCACCAATTCCAACAACAACCACCTCAGCCGCAGCAGCTTCAAAACATGCAACTCGAATTTGGTGCTGACGGCGCTGCTGTTTACAAGCCCGTCGCAACCGCCTCCCCAACCTACAACCCCTCCACCACCGTCGCCGCCGCCTCCGCCGTCGCTACTGTCAACATCAACGGTGGTGAACCCACTGCTGCGGCGGTGCCCGTGTCCGAGGGCCAAGGCCAATTGGGTAGCACTTCTGAACCCTTGAAAAGGAAGAGGGGGAGGCCCAGGAAATATGGACCTGATGGCTCCATTGGATTAGCCTTGACGCCAACTCTTACCTCTCCTCAACCTGCTGCTTCCGCCGCCGCCGCCTCCCCAGCCCCCGTCGACGGCGGAGCATTTTCTCCTGCTCCTCCTCCTCCAGCTTCTGCCACGCCTGGTTCCTCGAAGAAGGGAAGAGGCAGGCCTCGCGGATCTGGCAATAAGAATCGATTTAGGGCTTCTGGATCAGCAGGAGTTTCTTTCATACCTCACATCATAAATGTGAAGGCTGGAGAGGACTTGTCATCAAAAATCATGGCACTTTCCCTGAATGGGCCAAGAAATGTTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGTCAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCTCTTGGTGGTTCTTTGGTGCTTTCTGAAAATGATGGTCAGAACAGCAGATATGGTGGATTAAGTGTGTCTTTGTCAGGGCCAGATGGCCGTGTTTTGGGTGGCGGAGTTGCAGGTCTTTTGGTAGCTGCTACCCCTGTTCAGGTTATTTTGGCTAGCTTCTTTTCAGAGGGTTGCAAGGAATCCAAGTCTGCAAAGCAGATGGCAAAGTTATCTGCCCCGCCAAAAGTTTCCGCAGCTGGCCAAAGCAGCTCTCCATCACGGGGTACTCGTAGTGAATCGTCGGGTGGACCTGGAAGCCCGCTTAACCAGAGTACAGGAGCCTGCAATAACAATAACCCACCACAAGGCATTTCAGGCATGCCCTGGAAGTAA 1119 0.5317 MSSGSDMGNTNRDQFSVGIHQFQQQPPQPQQLQNMQLEFGADGAAVYKPVATASPTYNPSTTVAAASAVATVNINGGEPTAAAVPVSEGQGQLGSTSEPLKRKRGRPRKYGPDGSIGLALTPTLTSPQPAASAAAASPAPVDGGAFSPAPPPPASATPGSSKKGRGRPRGSGNKNRFRASGSAGVSFIPHIINVKAGEDLSSKIMALSLNGPRNVCILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSLVLSENDGQNSRYGGLSVSLSGPDGRVLGGGVAGLLVAATPVQVILASFFSEGCKESKSAKQMAKLSAPPKVSAAGQSSSPSRGTRSESSGGPGSPLNQSTGACNNNNPPQGISGMPWK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00004 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 189 302 IPR005175 -
Gabi3269g00004 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 187 305 - -
Gabi3269g00004 372 Gene3D - 189 320 - -
Gabi3269g00004 372 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3269g00004 372 MobiDBLite consensus disorder prediction 325 366 - -
Gabi3269g00004 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 358 IPR039605 GO:0003680
Gabi3269g00004 372 CDD DUF296 189 302 IPR005175 -
Gabi3269g00004 372 ProSiteProfiles PPC domain profile profile. 181 323 IPR005175 -
Gabi3269g00004 372 MobiDBLite consensus disorder prediction 81 179 - -
Gabi3269g00004 372 SMART AT_hook_2 101 113 IPR017956 GO:0003677
Gabi3269g00004 372 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Gabi3269g00004 372 MobiDBLite consensus disorder prediction 314 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00004 Gabi-Chr3269 21248 25341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00004 34 372 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 50.000 1.00e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00004 - - tcc:18592087 337.421