Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00003 ATGTCGTCTGGATCTGACATGGGCAACACAAACAGAGACCAATTCAGCGTTGGGATTCACCAATTCCAACAACAACCACCTCAGCCGCAGCAGCTTCAAAACATGCAACTCGAATTTGGTGCTGACGGCGCTGCTGTTTACAAGCCCGTCGCAACCGCCTCCCCAACCTACAACCCCTCCACCACCGTCGCCGCCGCCTCCGCCGTCGCTACTGTCAACATCAACGGTGGTGAACCCACTGCTGCGGCGGTGCCCGTGTCCGAGGGCCAAGGCCAATTGGGTAGCACTTCTGAACCCTTGAAAAGGAAGAGGGGGAGGCCCAGGAAATATGGACCTGATGGCTCCATTGGATTAGCCTTGACGCCAACTCTTACCTCTCCTCAACCTGCTGCTTCCGCCGCCGCCGCCTCCCCAGCCCCCGTCGACGGCGGAGCATTTTCTCCTGCTCCTCCTCCTCCAGCTTCTGCCACGCCTGGTTCCTCGAAGAAGGGAAGAGGCAGGCCTCGCGGATCTGGCAATAAGAATCGATTTAGGGCTTCTGCAGGAGTTTCTTTCATACCTCACATCATAAATGTGAAGGCTGGAGAGGACTTGTCATCAAAAATCATGGCACTTTCCCTGAATGGGCCAAGAAATGTTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGTCAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCTCTTGGTGGTTCTTTGGTGCTTTCTGAAAATGATGGTCAGAACAGCAGATATGGTGGATTAAGTGTGTCTTTGTCAGGGCCAGATGGCCGTGTTTTGGGTGGCGGAGTTGCAGGTCTTTTGGTAGCTGCTACCCCTGTTCAGGTTATTTTGGCTAGCTTCTTTTCAGAGGGTTGCAAGGAATCCAAGTCTGCAAAGCAGATGGCAAAGTTATCTGCCCCGCCAAAAGTTTCCGCAGCTGGCCAAAGCAGCTCTCCATCACGGGGTACTCGTAGTGAATCGTCGGGTGGACCTGGAAGCCCGCTTAACCAGAGTACAGGAGCCTGCAATAACAATAACCCACCACAAGGCATTTCAGGCATGCCCTGGAAGTAA 1113 0.5319 MSSGSDMGNTNRDQFSVGIHQFQQQPPQPQQLQNMQLEFGADGAAVYKPVATASPTYNPSTTVAAASAVATVNINGGEPTAAAVPVSEGQGQLGSTSEPLKRKRGRPRKYGPDGSIGLALTPTLTSPQPAASAAAASPAPVDGGAFSPAPPPPASATPGSSKKGRGRPRGSGNKNRFRASAGVSFIPHIINVKAGEDLSSKIMALSLNGPRNVCILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSLVLSENDGQNSRYGGLSVSLSGPDGRVLGGGVAGLLVAATPVQVILASFFSEGCKESKSAKQMAKLSAPPKVSAAGQSSSPSRGTRSESSGGPGSPLNQSTGACNNNNPPQGISGMPWK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00003 370 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3269g00003 370 MobiDBLite consensus disorder prediction 323 364 - -
Gabi3269g00003 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 187 300 IPR005175 -
Gabi3269g00003 370 Gene3D - 187 318 - -
Gabi3269g00003 370 CDD DUF296 187 300 IPR005175 -
Gabi3269g00003 370 ProSiteProfiles PPC domain profile profile. 179 321 IPR005175 -
Gabi3269g00003 370 SMART AT_hook_2 101 113 IPR017956 GO:0003677
Gabi3269g00003 370 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Gabi3269g00003 370 MobiDBLite consensus disorder prediction 81 178 - -
Gabi3269g00003 370 MobiDBLite consensus disorder prediction 312 370 - -
Gabi3269g00003 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 356 IPR039605 GO:0003680
Gabi3269g00003 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 185 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00003 Gabi-Chr3269 21245 25341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00003 34 370 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 49.719 2.14e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00003 - - tcc:18592087 330.872