Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3269g00001 ATGTTAGCAATGGAAGAGCTATTATGTGAACTTACTGATCATGAAAAGAGAAACAAGCAAGGTTTGCCACCAGGTTTTAGGTTTCACCCGACTGATGAAGAACTTGTAACCTTTTATTTGGCTTCAAAGGTGTTTAACGGCAGCTTCACTGATATCAAATTTGCTGAGGTTGATCTCAATAGATGTGAACCATGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGATACTGGAAGGCCACTGGGAAGGACAGGGAAATTTACAGTGCGTCCAGTGGAGCCCTACTTGGCATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGGTGACTTTTCCATTTCCCACCCTCACACTCACACTTGTAAGGAGGAATGGGTGATATGCAGGATATTTCATAAATCTGGGGAGAAGAAAACTCCACTGCTTCAAGTTCAAGGACATTTGGTACCTTCTTTGTCCCCCACAAAAAGTTCTTTACCCCCATTACATGCAAGTCCAATGACTTCCTTTTCACTTGAACTAGAATGTCAATCCCAAGTTCTGATTCACCACCAAGAGCAAAATGACCTCTCCCATTCTCATATTTTCCCATTGCATGCATTCCAACCTTCTTTCCCAATAGCTGCTGCTAGTGCATCAGGAGAAATCACCAACACAAGAAACCATCCATCTTCGGAACTATTCTTGAAGTCCAAGCTTTCGCAACAATATTCCACCCTGAAGGTCAAGGAACAGAATATTCCGAAAACGGAGGCTACATTCTATCAATACCAATTACTAGATGACACTAATAACTTGCGCTGGATGGAAAAGTTGAATCCAAATCAAAGTAATTTCCAGAACTCCTTCCCTCTAGAGATGGATGCTGACCTGATGGTGTTCTCAGGAGCTGGAAATGGTGAATATAGGGACATGTACAATTCAATAGCCTTTAACAGAGTAGGGTTGCAACAGATGCCAGATACTCCTATCGGAACAGATTCTTGGCCGCTGGCCCAGAATGTTTAG 1134 0.4383 MLAMEELLCELTDHEKRNKQGLPPGFRFHPTDEELVTFYLASKVFNGSFTDIKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDREIYSASSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSISHPHTHTCKEEWVICRIFHKSGEKKTPLLQVQGHLVPSLSPTKSSLPPLHASPMTSFSLELECQSQVLIHHQEQNDLSHSHIFPLHAFQPSFPIAAASASGEITNTRNHPSSELFLKSKLSQQYSTLKVKEQNIPKTEATFYQYQLLDDTNNLRWMEKLNPNQSNFQNSFPLEMDADLMVFSGAGNGEYRDMYNSIAFNRVGLQQMPDTPIGTDSWPLAQNV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3269g00001 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 263 - -
Gabi3269g00001 377 Gene3D NAC domain 31 180 IPR036093 GO:0003677|GO:0006355
Gabi3269g00001 377 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Gabi3269g00001 377 SUPERFAMILY NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
Gabi3269g00001 377 ProSiteProfiles NAC domain profile. 22 175 IPR003441 GO:0003677|GO:0006355
Gabi3269g00001 377 FunFam NAC domain-containing protein 100-like 31 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3269g00001 Gabi-Chr3269 7196 9704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3269g00001 1 181 NAC Transcription Factor Family AT1G76420 73.481 5.68e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3269g00001 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3269g00001 - - gmx:100780313 503.056