Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3267g00002 ATGTACCAAAATTTCCTTATAACTTCTCATACTCCATGGCTGAAATTCACTTTCAAACTCACTCCCACAGGAGCACCCACTATTAGCCCCACCATAAGCAAACCATGCATTAATCCTTCAGAACCTGCTGCAGCTGGTTTCAATTTAATGGTTCTTATAGCAGCCATTGTTTGTGCTTTTGTTTGTGCTCTTGGCCTCAACACAAGGTTACAATGTGTGTTCCAATGTGCTAACCGTGTCCTTACACAGCCTCAGCAATGGATTGTTTCTCGCAGGCTCAATTCTGGCCTCAAGAAGAAAGAAATGGTAGCTTTGCCAACCTCAACTTACAACCATTCTGGTTCTACTCCATCTTCAGCTTCTATTTGTGTCATTTGCTTAGTAGATTTCTCTGATGGTGACAAGTTAAGGTTCCTCCCAAGTTGCAATCACCGTTTCCATGTTGCTTGCATTGATAAGTGGTTGCTTTCTCATTCTTCTTGCCCCACTTGCAGGAACCACCTCAAGTCCAATGATTCATTACACTCTTTAGATATTGTCATATCATAG 549 0.4189 MYQNFLITSHTPWLKFTFKLTPTGAPTISPTISKPCINPSEPAAAGFNLMVLIAAIVCAFVCALGLNTRLQCVFQCANRVLTQPQQWIVSRRLNSGLKKKEMVALPTSTYNHSGSTPSSASICVICLVDFSDGDKLRFLPSCNHRFHVACIDKWLLSHSSCPTCRNHLKSNDSLHSLDIVIS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3267g00002 182 CDD RING-H2_EL5-like 122 165 - -
Gabi3267g00002 182 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Gabi3267g00002 182 Pfam Ring finger domain 123 165 IPR001841 -
Gabi3267g00002 182 PANTHER RING-H2 FINGER PROTEIN ATL78 43 170 IPR044602 GO:0016567|GO:0016740
Gabi3267g00002 182 SUPERFAMILY RING/U-box 122 172 - -
Gabi3267g00002 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 171 IPR013083 -
Gabi3267g00002 182 SMART ring_2 123 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3267g00002 Gabi-Chr3267 25041 25705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3267g00002 48 168 C3H Transcription Factor Family AT3G10910 46.512 8.00e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3267g00002 - K19040 gmx:100803003 248.825