Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3266g00053 ATGGGAACTATTGGTAGCATTGGCTTCCCTTCAGCATCGAAAGCTGCTTTGGGCACGCAAGTACTTTCAAATCAAAGGAAGCATAAATCGCCTTACAGTTTTATGGTTCCTCCTAACTACTCTGTTAGGCTGAGTCAAATCTGTTGTAAACTATCAGAAAGTGGGATTGAGGAGAACCCCACAAGCAAGAGAGCCTCTAAATCCAAGGACAGGATGGAGGAATACAATATAGCCATGAAAAGGATGATGAGGAACCCTTACGAGTATCACCATGATCTGGGCATGAATTACACACTTATAACTGACTATTTGATTGTGGGCTCTCAACCACAGAAACCAGAAGACGTAGATCACCTCAAAAAGGAAGAGGGTGTTGCATACATTCTAAACTTGCAACAGGATAATGATGTTGAATACTGGGGAATAGACTTGCAGTCAATAATAAGAAAGTGTCGTGAACTTGAAATTAGGCACATGAGGAGGCCGGCAAAAGACTTTGATCCAAACTCCTTGCGAAGTGAACTACCTAAAGCGGTCTCATCCTTGGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGCACTGCTGGACTTGGTAGAGCTCCGGCTGTGGCAATTGCTTATTTGTTCTGGTTTTGTAGCATGAATCTAAATGCAGCATATGATATGCTGACATCAAAGAGACCTTGTGGACCGAATAGAAAAGCAATACGAGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGAATATGCATTTGAGAATATAGCAGACTGGGAGAGGAACTTGATTCAAAATCGTGTCCGTTCCCTTCGTGGAACTTGA 861 0.4251 MGTIGSIGFPSASKAALGTQVLSNQRKHKSPYSFMVPPNYSVRLSQICCKLSESGIEENPTSKRASKSKDRMEEYNIAMKRMMRNPYEYHHDLGMNYTLITDYLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDNDVEYWGIDLQSIIRKCRELEIRHMRRPAKDFDPNSLRSELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCSMNLNAAYDMLTSKRPCGPNRKAIRGATYDLAKNDPWKEPFESLPEYAFENIADWERNLIQNRVRSLRGT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3266g00053 286 Coils Coil 65 85 - -
Gabi3266g00053 286 SMART dsp_5 96 238 IPR020422 GO:0006470|GO:0008138
Gabi3266g00053 286 Gene3D Protein tyrosine phosphatase superfamily 79 286 IPR029021 -
Gabi3266g00053 286 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 44 254 - -
Gabi3266g00053 286 Pfam Dual specificity phosphatase, catalytic domain 117 236 IPR000340 GO:0008138|GO:0016311
Gabi3266g00053 286 CDD DSP_laforin-like 95 242 IPR045204 GO:0019203
Gabi3266g00053 286 ProSiteProfiles Dual specificity protein phosphatase domain profile. 96 253 IPR020422 GO:0006470|GO:0008138
Gabi3266g00053 286 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 79 286 - -
Gabi3266g00053 286 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 238 IPR029021 -
Gabi3266g00053 286 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 232 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3266g00053 Gabi-Chr3266 441147 443626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3266g00053 29 286 Protein tyrosine phosphatase (PTP) family AT3G10940 74.517 2.08e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3266g00053 - - gmx:100805592 496.123