Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3266g00047 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCTTCTCAAATGGGGAGAAAACATATGTTGGGCCCTCCTGGAACCCTAAATACCATTACCCCTTGTGCAGCATGTAAACTTTTGAGACGAAGATGTGCCCAAGAATGTCCTTTTTCTCCATATTTCTCTCCTCATGAACCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCTAGCAACGTCTCAAAGATGCTAATGGAGGTACCAGAGTGTCAGAGAGCCGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGACCCTGTCTATGGATGCATGGGTGCAATTTCTTCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTAAGGGCAGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCTTCCTCTCATGCTCCAATGCTCCCTTCCTCTGGGACTGTTTCAATTGCTGCTCCACCGCCTCCGCCGCCACCTCCACCACCGCCTCCTCCTCCTCCTCCTCTTCCTCCATCTTCTTCCTCTTCTTCCATGTACATCCAACAGAGGGATCCCACCAATTATAGCAGATTTTTAAGTGATAATATTTCCTATTTTGGTTAA 660 0.4439 MSRERERFDEIGKKIKREGDVSSQMGRKHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLQAELNAVRAEILKYKLREANMIPSSHAPMLPSSGTVSIAAPPPPPPPPPPPPPPPPLPPSSSSSSMYIQQRDPTNYSRFLSDNISYFG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3266g00047 219 PRINTS Wilm's tumour protein signature 172 186 - -
Gabi3266g00047 219 PRINTS Wilm's tumour protein signature 124 140 - -
Gabi3266g00047 219 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Gabi3266g00047 219 MobiDBLite consensus disorder prediction 156 219 - -
Gabi3266g00047 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 180 - -
Gabi3266g00047 219 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Gabi3266g00047 219 MobiDBLite consensus disorder prediction 168 192 - -
Gabi3266g00047 219 MobiDBLite consensus disorder prediction 193 219 - -
Gabi3266g00047 219 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3266g00047 Gabi-Chr3266 374498 375719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3266g00047 1 155 AS2 family AT2G30340 66.061 3.62e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3266g00047 LOB 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3266g00047 - - ccaj:109797870 360.533