Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3266g00010 ATGGCAGGGGTGGTTCCCAAGAAGGCTAACAGTAACACCACCACCACCACCACCAACCCAGTTAACAAGAAGGAAAACACGAATCTTCTGTTGGGTCGGTTCGAGATTGGGAAGCTCCTCGGCCATGGAACCTTCGCCAAGGTCCACCATGCTCGGAACATCAAAACCGGTGAAGGGGTAGCCATAAAGATCATAGACAAAGAGAAGATCCTAAAGGGTGGCTTGATGTCACACATAAAGCGCGAGATCTCCATCCTCCGCCGTGTCCGCCATCCCAACATCGTGCAACTCTTCGAGGTGATGGCCACAAAGACAAAGATCTACTTCGTGATGGAGTATGTCCGTGGCGGCGAGCTCTTCAACAAGGTTGCCAAAGGAAGGTTGAAAGAACAAGTTGCAAGGAAGTACTTTCAACAGTTAGTTTCTGCCGTTGAGTTTTGCCACGCGAGAGGAGTGTTCCATAGGGATCTCAAGCCTGAAAATTTGTTACTTGACGAGAATGGTAACCTTAAAGTGTCCGATTTTGGTCTCAGTGCTGTGTCTGATCAAATTAGGCAAGATGGGTTGTTCCACACTTTTTGTGGAACACCTGCTTATGTTGCTCCTGAGGTTTTGGCTAGGAAAGGGTACGATGGTGCAAAGGTTGATATTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCTTTCCATGACCACAATGTTATGGCCATGTACAAGAAGATTTACAAGGGTGAATTCAGGTGTCCTAGGTGGTTCTCTCCTGAACTCTCTGCACTTCTCAGAAGGCTTCTTGATACCAAACCCGAAACCAGGATTTCCATTCCGGAGATTATGGAGAACCGGTGGTTCAAGAAAGGGTTCAAGCAAATAAAGTTTTATGTTGAGGATGATAGAGTTTGTGGTATTGATGATAAGGTGAACATTGATGATGATGATGATGTATCATCTGTATCAGAATCTGACTCAGAGGTTGACTTGAATGCATTTGATATCATATCATTTTCTCCGGGTTTTGATCTTTCTGGGTTGTTTGAGGAAAAGGGTGATGAGGCGAGGTTTGTGTCTGGTGCCCCAGTGTCCAAGATTATATCAAAATTGGAGGAAATTGCTCAGTTGGTTAGCTTTACGGTAAGGAAAAAAGACTGCAGGGTGAGTTTGGAGGGTTCTAGAGAAGGTGTAAAGGGGCCATTGACGATTGCTGCTGAGATATTTGAATTAACACCTTCTTTGGTGGTAGTGGAGGTGAAGAAAAAAGGAGGGGATAGAGCAGAATATGAGAAATTTTGTAACTCTGAATTGAAACCTGCGTTGCAGAATTTGATGATGGAGGAATCCGCAACTTCTTCACGCCCACCTACACCCACTGAATTACCTCTTTCTGACTCTCCGCTGGACATACCTTCAGATACTGAATCTTTGTACTAA 1440 0.4472 MAGVVPKKANSNTTTTTTNPVNKKENTNLLLGRFEIGKLLGHGTFAKVHHARNIKTGEGVAIKIIDKEKILKGGLMSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEQVARKYFQQLVSAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDHNVMAMYKKIYKGEFRCPRWFSPELSALLRRLLDTKPETRISIPEIMENRWFKKGFKQIKFYVEDDRVCGIDDKVNIDDDDDVSSVSESDSEVDLNAFDIISFSPGFDLSGLFEEKGDEARFVSGAPVSKIISKLEEIAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYEKFCNSELKPALQNLMMEESATSSRPPTPTELPLSDSPLDIPSDTESLY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3266g00010 479 ProSiteProfiles NAF domain profile. 326 350 IPR018451 GO:0007165
Gabi3266g00010 479 CDD STKc_SnRK3 33 287 - -
Gabi3266g00010 479 MobiDBLite consensus disorder prediction 7 24 - -
Gabi3266g00010 479 FunFam Non-specific serine/threonine protein kinase 328 446 - -
Gabi3266g00010 479 MobiDBLite consensus disorder prediction 446 460 - -
Gabi3266g00010 479 CDD CIPK_C 332 443 - -
Gabi3266g00010 479 Gene3D Kinase associated domain 1, KA1 333 448 - -
Gabi3266g00010 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gabi3266g00010 479 FunFam Non-specific serine/threonine protein kinase 24 329 - -
Gabi3266g00010 479 FunFam Non-specific serine/threonine protein kinase 25 113 - -
Gabi3266g00010 479 SUPERFAMILY Protein kinase-like (PK-like) 30 289 IPR011009 -
Gabi3266g00010 479 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3266g00010 479 Gene3D Transferase(Phosphotransferase) domain 1 23 332 - -
Gabi3266g00010 479 Pfam NAF domain 331 384 IPR004041 GO:0007165
Gabi3266g00010 479 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00010 479 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Gabi3266g00010 479 SMART serkin_6 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00010 479 ProSiteProfiles Protein kinase domain profile. 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00010 479 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 442 - -
Gabi3266g00010 479 MobiDBLite consensus disorder prediction 444 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3266g00010 Gabi-Chr3266 55226 57111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3266g00010 14 476 CBL-interacting serine-threonine protein kinases AT4G18700 74.380 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3266g00010 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3266g00010 - - gmx:100790133 764.992