Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3266g00006 ATGGCAGGGGTGGTTCCCAAGAAGGCTAACAGTAACACCACCACCACCACCACCAACCCAGTTAACAAGAAGGAAAACACGAATCTTCTGTTGGGTCGGTTCGAGATTGGGAAGCTCCTCGGCCATGGAACCTTCGCCAAGGTCCACCATGCTCGGAACATCAAAACCGGTGAAGGGGTAGCCATAAAGATCATAGACAAAGAGAAGATCCTAAAGGGTGGCTTGATGTCACACATAAAGCGCGAGATCTCCATCCTCCGCCGTGTCCGCCATCCCAACATCGTGCAACTCTTCGAGGTGATGGCCACAAAGACAAAGATCTACTTCGTGATGGAGTATGTCCGTGGCGGCGAGCTCTTCAACAAGGTTGCCAAAGGAAGGTTGAAAGAACAAGTTGCAAGGAAGTACTTTCAACAGTTAGTTTCTGCCGTTGAGTTTTGCCACGCGAGAGGAGTGTTCCATAGGGATCTCAAGCCTGAAAATTTGTTACTTGACGAGAATGGTAACCTTAAAGTGTCCGATTTTGGTCTCAGTGCTGTGTCTGATCAAATTAGGCAAGATGGGTTGTTCCACACTTTTTGTGGAACACCTGCTTATGTTGCTCCTGAGGTTTTGGCTAGGAAAGGGTACGATGGTGCAAAGGTTGATATTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCTTTCCATGACCACAATGTTATGGCCATGTACAAGAAGATTTACAAGGGTGAATTCAGGTGTCCTAGGTGGTTCTCTCCTGAACTCTCTGCACTTCTCAGAAGGCTTCTTGATACCAAACCCGAAACCAGGATTTCCATTCCGGAGATTATGGAGAACCGGTGGTTCAAGAAAGGGTTCAAGCAAATAAAGTTTTATGTTGAGGATGATAGAGTTGAGTATAAAAGGAGGAATAATGCTTCACTTCCAAGGCCTGCAAGCTTGAATGCATTTGATATCATATCATTTTCTCCGGGTTTTGATCTTTCTGGGTTGTTTGAGGAAAAGGGTGATGAGGCGAGGTTTGTGTCTGGTGCCCCAGTGTCCAAGATTATATCAAAATTGGAGGAAATTGCTCAGTTGGTTAGCTTTACGGTAAGGAAAAAAGACTGCAGGGTGAGTTTGGAGGGTTCTAGAGAAGGTGTAAAGGGGCCATTGACGATTGCTGCTGAGATATTTGAATTAACACCTTCTTTGGTGGTAGTGGAGGTGAAGAAAAAAGGAGGGGATAGAGCAGAATATGAGAAATTTTGTAACTCTGAATTGAAACCTGCGTTGCAGAATTTGATGATGGAGGAATCCGCAACTTCTTCACGCCCACCTACACCCACTGAATTACCTCTTTCTGACTCTCCGCTGGACATACCTTCAGATACTGAATCTTTGTACTAA 1407 0.4513 MAGVVPKKANSNTTTTTTNPVNKKENTNLLLGRFEIGKLLGHGTFAKVHHARNIKTGEGVAIKIIDKEKILKGGLMSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEQVARKYFQQLVSAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDHNVMAMYKKIYKGEFRCPRWFSPELSALLRRLLDTKPETRISIPEIMENRWFKKGFKQIKFYVEDDRVEYKRRNNASLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVSGAPVSKIISKLEEIAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYEKFCNSELKPALQNLMMEESATSSRPPTPTELPLSDSPLDIPSDTESLY 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3266g00006 468 Pfam NAF domain 317 373 IPR004041 GO:0007165
Gabi3266g00006 468 CDD STKc_SnRK3 33 287 - -
Gabi3266g00006 468 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Gabi3266g00006 468 MobiDBLite consensus disorder prediction 7 24 - -
Gabi3266g00006 468 Gene3D Kinase associated domain 1, KA1 319 436 - -
Gabi3266g00006 468 CDD CIPK_C 321 432 - -
Gabi3266g00006 468 Gene3D Transferase(Phosphotransferase) domain 1 23 318 - -
Gabi3266g00006 468 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00006 468 MobiDBLite consensus disorder prediction 433 468 - -
Gabi3266g00006 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 431 - -
Gabi3266g00006 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gabi3266g00006 468 MobiDBLite consensus disorder prediction 435 449 - -
Gabi3266g00006 468 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3266g00006 468 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Gabi3266g00006 468 SMART serkin_6 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00006 468 FunFam Non-specific serine/threonine protein kinase 317 435 - -
Gabi3266g00006 468 ProSiteProfiles Protein kinase domain profile. 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00006 468 FunFam Non-specific serine/threonine protein kinase 24 313 - -
Gabi3266g00006 468 SUPERFAMILY Protein kinase-like (PK-like) 30 289 IPR011009 -
Gabi3266g00006 468 FunFam Non-specific serine/threonine protein kinase 25 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3266g00006 Gabi-Chr3266 55226 57111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3266g00006 14 465 CBL-interacting serine-threonine protein kinases AT4G18700 74.587 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3266g00006 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3266g00006 - - gmx:100807567 771.926