Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3266g00001 ATGGAAAGAAAATGGGACCCATTTGGATTATGGCTCCGGATTTATATTGGATTCATTTGTCTGTGGGGAACTCGACAGTGTTGGTCTCTGAATGATGAAGGATTAGCTTTGTTGAAATTTCGGGTAAGAATAACTTCTGATCCTTATGGTGCTCTGGCAAATTGGAATCCAAATGATTGCAATCCTTGCAAGTGGTTGGGTGTTCATTGTGTTGATGGTAAAGTTCAGATGCTGGACCTAAATGGTCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTGGTCACTTAAAATCTCTTGTGTTATGCAAGAACAATTTTTCTGGCACCATTCCCAAAGAACTTGGAGATCTAGACATGCTGGAGTTATTGGATTTAAGGGAGAATAACTTGACTGGAAGTATTCCAGCAGAGATTGGCAGGTTGTTGTTGTTAAAACAATTGTTGGTTTCTGGCAATAAAATTGAAGGAAGTGATTCGCAAGAGCTCGGATTGCCCTCTAAATCACCATTTGTTGACTATTGTTCATCTTCTCTTGCAACTTTATTTCTCCGCAAGAATAGAAAGTTTGCCCACTGTTTGTGGCATAAAGATTTCAAGCAATGGAATAGAGCAGATTCATTGGTTATCCCAATTAAAAAATACCTTAATACCATCGCACGGTCACTGTTCAAGCTAGGAAAGGATGCCCCTCATGGCTATGAGGAGAATTACTGTGACAATCTGCCTAGTTCCAAAGAGCCAGAGATTGGCCAGGATTTATCAAATCTAGTCAATTCTGCACGTCGCAAGTTACTCGATCAGTCCAGTAACCTCGCAGCTGCACCTTTTACTGGTGGGCCTACTATACAGATCAGTTCTCTTCCAATTAGCGTGAGTAGTGGAGCTTTCCCAGCTGTGCCAGATCCCAATAAGAAACAAAATCAGTCACCTGCACCACTGCCTTCACCTTCTGATTCTCCACATGATAAAACAAGTCAACAAAGTTCAGCTAATGGTGCTTCTGGAAAATTGTGGAAGTATATTTTTATTATCTTGGGTGTGGCTGTCTTGGTCATTGTTGTTGTCATCATGCTTTGCATTTGGCGAAAACGAGCAGTAAAAGTAATAAAGCCTTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTGTAACAGGGGTCCCCAAGTTGAATCGATCAGAGCTGGAGACAGCCTGCGAAGATTTCAGCAATATCATTAATAGCTTTGATGAGTCCACCATATACAAAGGAACACTGTCCAGTGGAGTCGAGATTGCGGTTGATTCTACCATTGTTACTTCTTCCAAAAATTGGTCGAAGAACATGGAGATGGCCTATCGGAAAAAGATTGATACTTTATCTCGCGTTAACCATAAGAACTTTACTAATCTTATTGGGTACTGTGACGAAGAAGAACCATTCACTAGGATAATGGTATTTGAGTATGCTCCAAATGGAAGCCTATTCGAGCATCTGCATGTTAAGGAACTTGAACATCTTGATTGGAGTGCAAGGATGAGGATTATAATGGGCACTGCTTATTGTCTTCAGTACATGCACCATGATCTGAATCCACCAGTAGCTCATTCCAACCTTAATTCAGCTTCTATATTATTAACAGATGACTTTGCCCCTAAGGTTTCAGAGATCACTTTTGGCAAGAATTTGTTATCACCAGCCAACTCACCTGGACATAAATCAAGGAAATCTGAGTTGCCACCCCACTCTGATCCTGAAACCGATGTCTATAACTTTGGAATATTGTTGCTTGAAATCCTTTCTGCCAAACTACCTTACTCTGAAGAACAAGGCCACCTTGTGAACTGGGCTGCTGAGTACTTGAATGATAAACGAAGCATCAGCTATTTGATTGATCCGACACTAAAGTCCTTCAAAGACAATGAACTTGATGTCATCTGTGAGGTGATTAAAGATTGTCTTCAATCTGATCCAAGGTTAAGACCAACAATAAAAGACACAACTTCCAAATTGAGTGAAGTGCTTCGTATATCACCTGAGCAAGCTGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAACTGGAGATCTTGTCAGTAGAGGCCACTTAA 2100 0.4119 MERKWDPFGLWLRIYIGFICLWGTRQCWSLNDEGLALLKFRVRITSDPYGALANWNPNDCNPCKWLGVHCVDGKVQMLDLNGLSLEGTLAPELGKLGHLKSLVLCKNNFSGTIPKELGDLDMLELLDLRENNLTGSIPAEIGRLLLLKQLLVSGNKIEGSDSQELGLPSKSPFVDYCSSSLATLFLRKNRKFAHCLWHKDFKQWNRADSLVIPIKKYLNTIARSLFKLGKDAPHGYEENYCDNLPSSKEPEIGQDLSNLVNSARRKLLDQSSNLAAAPFTGGPTIQISSLPISVSSGAFPAVPDPNKKQNQSPAPLPSPSDSPHDKTSQQSSANGASGKLWKYIFIILGVAVLVIVVVIMLCIWRKRAVKVIKPWKTGISGQLQKAFVTGVPKLNRSELETACEDFSNIINSFDESTIYKGTLSSGVEIAVDSTIVTSSKNWSKNMEMAYRKKIDTLSRVNHKNFTNLIGYCDEEEPFTRIMVFEYAPNGSLFEHLHVKELEHLDWSARMRIIMGTAYCLQYMHHDLNPPVAHSNLNSASILLTDDFAPKVSEITFGKNLLSPANSPGHKSRKSELPPHSDPETDVYNFGILLLEILSAKLPYSEEQGHLVNWAAEYLNDKRSISYLIDPTLKSFKDNELDVICEVIKDCLQSDPRLRPTIKDTTSKLSEVLRISPEQAVPRLSPLWWAELEILSVEAT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3266g00001 699 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Gabi3266g00001 699 Pfam Protein tyrosine and serine/threonine kinase 417 668 IPR001245 GO:0004672|GO:0006468
Gabi3266g00001 699 ProSiteProfiles Protein kinase domain profile. 404 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3266g00001 699 FunFam Nuclear pore complex protein NUP107 30 182 - -
Gabi3266g00001 699 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Gabi3266g00001 699 SUPERFAMILY L domain-like 37 189 - -
Gabi3266g00001 699 Gene3D Phosphorylase Kinase; domain 1 375 486 - -
Gabi3266g00001 699 PANTHER PROTEIN MALE DISCOVERER 2 20 697 - -
Gabi3266g00001 699 MobiDBLite consensus disorder prediction 562 581 - -
Gabi3266g00001 699 Gene3D Transferase(Phosphotransferase) domain 1 487 680 - -
Gabi3266g00001 699 FunFam Inactive receptor-like serine/threonine-protein kinase 378 486 - -
Gabi3266g00001 699 MobiDBLite consensus disorder prediction 301 334 - -
Gabi3266g00001 699 Gene3D Ribonuclease Inhibitor 29 215 IPR032675 -
Gabi3266g00001 699 SUPERFAMILY Protein kinase-like (PK-like) 387 665 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3266g00001 Gabi-Chr3266 19078 26238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3266g00001 18 671 Receptor kinase-like Gene Family AT2G42290 25.490 1.06e-46 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gabi3266g00001 PK_Tyr_Ser-Thr 1.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3266g00001 - - gmx:100808098 1046.57