Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3262g00027 ATGAGGAAACCTGATCTCATGGGCAAAGACCAAATGAACAACAACAACAACATCATTAAGAGTAAGCTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAACTAATAAGGTACATGATAACTAAGGGACAAGGATGTTGGAGTGACATTGCTAGAAATGCTGGTCTACAGAGATGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTAAAGCGTGGTGCATTCTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCTATTCTTGGCAACAGATGGTCCCAGATTGCGGCTCGTCTCCCTGGTCGCACAGACAACGAGATCAAGAATTTCTGGAACTCAACGCTGAAGAAAAGACTGAAAATCAATAACTCCACTCCGTCACCAAACAACAGCGACTCATCAGAACCTAGAGATGTTTTGGGTGGGATCATACCCATTAATGAACATGAACTCACAACCATGTGCATGGATTCCACTTCATCAACTTCATCATCATCCATGCAATCCATGCATGCTATGGTTTTAGCTGACCAATATGATCCCTTTTCCTTGTTTTCAAATCGTTATGACATGACCGGTATAGCCGGTTACCCTGACATGCCTGCATGCTTAACCCAAGTTGGTATGGTAGATGGGCTACAAGGTGAATATCGGAAATTGGAGCCTAATAAAATGGGGTTAGAAAGCGACTTTTCTCTTCCTCCACTAGAAAGTAGAAGCATTGAAGACAATATTACCCCAATTGATATGAAAAGCAATAACAACAACTTCAATAATAGTTGCTTCAATAACACTGATCAGATTCAGAACTCCAACGTAGATGATTTGTTTGGGTTTGGAAATCATGGGCAAGGAGAAAACTTAAGAATGGGAGAATGGGACTTCGAGGGTTTGATGCAAGACATATCCTATTTTCCTTCCCTTGATTTCCAAGTTTAA 963 0.4133 MRKPDLMGKDQMNNNNNIIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKINNSTPSPNNSDSSEPRDVLGGIIPINEHELTTMCMDSTSSTSSSSMQSMHAMVLADQYDPFSLFSNRYDMTGIAGYPDMPACLTQVGMVDGLQGEYRKLEPNKMGLESDFSLPPLESRSIEDNITPIDMKSNNNNFNNSCFNNTDQIQNSNVDDLFGFGNHGQGENLRMGEWDFEGLMQDISYFPSLDFQV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3262g00027 320 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Gabi3262g00027 320 MobiDBLite consensus disorder prediction 129 148 - -
Gabi3262g00027 320 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Gabi3262g00027 320 FunFam MYB transcription factor 22 78 - -
Gabi3262g00027 320 CDD SANT 80 123 IPR001005 -
Gabi3262g00027 320 PANTHER MYB DOMAIN PROTEIN 55 15 272 - -
Gabi3262g00027 320 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Gabi3262g00027 320 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Gabi3262g00027 320 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Gabi3262g00027 320 Gene3D - 79 147 - -
Gabi3262g00027 320 CDD SANT 28 72 IPR001005 -
Gabi3262g00027 320 Gene3D - 22 78 - -
Gabi3262g00027 320 SMART sant 77 125 IPR001005 -
Gabi3262g00027 320 SMART sant 24 74 IPR001005 -
Gabi3262g00027 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Gabi3262g00027 320 MobiDBLite consensus disorder prediction 129 144 - -
Gabi3262g00027 320 FunFam Transcription factor MYB46 79 147 - -
Gabi3262g00027 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3262g00027 Gabi-Chr3262 388604 391010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3262g00027 1 320 MYB Transcription Factor Family AT3G08500 47.899 1.68e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3262g00027 Myb_DNA-binding 4.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3262g00027 K09422 - gmx:100813660 457.603