Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3262g00008 ATGGCTTTCACACTAGATAAGTGTGAAGATAATATAGTGTTCACTATGGAGTCTCAGAAGCCAGTGCCTGCTCCATTCTTAACAAAGACATACCAGCTTGTTGATGATCCTCGCACTAACCACATTGTGTCTTGGAGTGATGATGAAACTACATTTATTGTGTGGAGGCCCCCTGAATTTGCTAGAGATCTTCTTCCAAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAGCTAAATACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTCAGCACCTTTTATGTGAAATCCAAAGGAGAAAAACCCCTCAGCAACATTACCATGATCAACAACAACAACATCTTCAGCCAGATGAAAGTCTCTGTTGGATTGATACCCCATCACCATCTCCAAAATCAGGCACAGATATATTAACAGCACTTTCTGAGGATAATCAAAGACTAAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTGTACAATGACATTATATATTTCATCCAAAACCATGTAAACCCTGCTTCCTTTGAACAAAGAAACAGCAGTGCTATCCTGAAGCTTGTAGAATTGGATTCATCACCTCAAGCACCAAATGTTATTAGACCAGCTAAGAGTTGTATTATGGAGAAGTCTTTGATAACTTCTTATGAGGAGTCTAATAGTACTCTGAAGCTTTTTGGGGTTCCTCTTTGTGGCAAAAAGAGATTACATCCAGATCAACAAGAATAA 792 0.3889 MAFTLDKCEDNIVFTMESQKPVPAPFLTKTYQLVDDPRTNHIVSWSDDETTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAQHLLCEIQRRKTPQQHYHDQQQQHLQPDESLCWIDTPSPSPKSGTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVNPASFEQRNSSAILKLVELDSSPQAPNVIRPAKSCIMEKSLITSYEESNSTLKLFGVPLCGKKRLHPDQQE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3262g00008 263 FunFam Heat stress transcription factor B-4 18 116 - -
Gabi3262g00008 263 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3262g00008 263 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3262g00008 263 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3262g00008 263 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Gabi3262g00008 263 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3262g00008 263 Gene3D - 18 117 IPR036388 -
Gabi3262g00008 263 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 203 IPR027725 -
Gabi3262g00008 263 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3262g00008 263 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3262g00008 Gabi-Chr3262 41039 42155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3262g00008 10 258 HSF AT1G46264 48.026 2.25e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3262g00008 HSF_DNA-bind 4.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3262g00008 K09419 - gmx:100776060 424.476