Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3262g00002 ATGGGCAACTGTTGCTCAGGTGGCTCTGATGATGAACCTGCCCCCAAGGGAGAAACCAACCAGCAGCAAGATGCAGCAGTTGCAGATTCTGGCAACACCCCATCACAACCACCACCATCATCATCATCCAAACCATCACCTCCTCCTTCTAAGCAATCAAAACCAGCACCAATTGGTCCTGTCCTTGGAAGGCCAATGGAGGATGTGAAAGCCACTTACACAATGGGGAAGGAGCTAGGGAGAGGACAATTTGGTGTGACCCATTTGTGCACACACAAGGCCACTGGTAAACAATTTGCATGCAAAACCATAGCCAAGAGAAAGCTTGTGAACAAGGAGGACATAGAGGATGTTAGGAGGGAGGTTCAAATCATGCACCACCTCACGGGGCAACCTAATATTGTGGAACTCGTTGGTGCCCATGAGGATAAGCATTCTGTTCATTTGGTCATGGAGTTGTGTGCAGGTGGTGAGCTTTTCGACCGTATCATTGCCAAGGGCCATTACACTGAGCGTGCTGCAGCTTCCTTGATGAGAACCATTGTTCAGATCGTTCATACTTGTCATTCCTTGGGTGTCATTCATAGGGATCTTAAGCCTGAGAATTTCCTTTTGTTGAACAAGGATGAGAATGCACCCCTCAAGGCCACCGATTTCGGCTTATCAGTTTTTTACAAGCAAGGAGAGATGTTTAAAGACATTGTTGGTAGTGCGTATTATATTGCACCTGAGGTCTTGAAGAGGAAATATGGGCCCGAAGCAGACATTTGGAGTATCGGTGTCATGCTATACATTCTTTTATCCGGCGTTCCTCCATTTTGGGCAGAATCCGAAAATGGGATATTCAATGCCATCCTAAGAGGCCACATTGACTTTACAAGCGATCCATGGCCGTCCATTTCGCCTGCTGCAAAAGATCTTGTAAGGAAAATGTTGAATTCGGATCCCAAGCAGAGGTTGACAGCCTACCAAGTTCTGAATCATCCATGGATCAAGGAGGATGGAGAGGCGCCAGATAAACCTCTTGACAATGCAGTGCTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAGAGTTGCTCTAAGGGTCATTGCCGGCTGCTTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTCAAAGGGATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAGCAAGGGCTTTCAAAGCAAGGGACTAAGCTGACAGAACAAGAAGTTAAGCATTTAATGGAAGCTGCAGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCGCAGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATGTTTATGCTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTACATTACCATTGAAGAACTAGAGCAAGCTCTCCACGAGTATAACATGCATGATGGCAGGGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGATGGCCGGATTAACTATGATGAGTTTGCTGCAATGATGACCAAAGGAAACCCAGAAGCTCATACCAAGAAGAGGCGTGATTCAACCTTGTATTAA 1587 0.4549 MGNCCSGGSDDEPAPKGETNQQQDAAVADSGNTPSQPPPSSSSKPSPPPSKQSKPAPIGPVLGRPMEDVKATYTMGKELGRGQFGVTHLCTHKATGKQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELVGAHEDKHSVHLVMELCAGGELFDRIIAKGHYTERAAASLMRTIVQIVHTCHSLGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEMFKDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYILLSGVPPFWAESENGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKRVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLSKQGTKLTEQEVKHLMEAADADGNGTIDYDEFIAATMHMNRMNREEHVYAAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIISEVDADNDGRINYDEFAAMMTKGNPEAHTKKRRDSTLY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3262g00002 528 Gene3D Transferase(Phosphotransferase) domain 1 159 338 - -
Gabi3262g00002 528 ProSiteProfiles EF-hand calcium-binding domain profile. 485 516 IPR002048 GO:0005509
Gabi3262g00002 528 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Gabi3262g00002 528 FunFam calcium-dependent protein kinase 1 159 338 - -
Gabi3262g00002 528 Gene3D Phosphorylase Kinase; domain 1 75 158 - -
Gabi3262g00002 528 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Gabi3262g00002 528 SUPERFAMILY Protein kinase-like (PK-like) 51 359 IPR011009 -
Gabi3262g00002 528 SUPERFAMILY EF-hand 371 511 IPR011992 -
Gabi3262g00002 528 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Gabi3262g00002 528 Gene3D - 339 517 - -
Gabi3262g00002 528 FunFam Calcium-dependent protein kinase 1 75 158 - -
Gabi3262g00002 528 SMART efh_1 414 442 IPR002048 GO:0005509
Gabi3262g00002 528 SMART efh_1 450 478 IPR002048 GO:0005509
Gabi3262g00002 528 SMART efh_1 485 513 IPR002048 GO:0005509
Gabi3262g00002 528 SMART efh_1 378 406 IPR002048 GO:0005509
Gabi3262g00002 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Gabi3262g00002 528 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3262g00002 528 CDD STKc_CAMK 73 330 - -
Gabi3262g00002 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 506 - -
Gabi3262g00002 528 FunFam Calcium-dependent protein kinase 1 339 514 - -
Gabi3262g00002 528 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Gabi3262g00002 528 MobiDBLite consensus disorder prediction 1 64 - -
Gabi3262g00002 528 MobiDBLite consensus disorder prediction 15 37 - -
Gabi3262g00002 528 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Gabi3262g00002 528 Pfam EF-hand domain pair 449 510 IPR002048 GO:0005509
Gabi3262g00002 528 Pfam EF-hand domain pair 379 439 IPR002048 GO:0005509
Gabi3262g00002 528 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Gabi3262g00002 528 SMART serkin_6 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3262g00002 528 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Gabi3262g00002 528 MobiDBLite consensus disorder prediction 38 55 - -
Gabi3262g00002 528 ProSiteProfiles Protein kinase domain profile. 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3262g00002 528 ProSitePatterns Protein kinases ATP-binding region signature. 79 106 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3262g00002 Gabi-Chr3262 11952 14671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3262g00002 1 527 EF-hand Containing Proteins AT5G12180 81.664 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3262g00002 Pkinase 5.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3262g00002 K13412 - gmx:100819061 919.072