Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3260g00003 ATGAAGAGAGGCAGAGAAGAGGAGGGTATATTGGCTAAGCCTAACTGTTTGATGTTAATTACCAAAGTTGGTGAAAGTGAAAGTGAAACCAAACCATCGAGGGAGGGAGAGTTAAAGGATGGTGGTTTTAAGTGCAAAACATGCAATAGAAAGTTCTCTTCTTTTCAAGCCCTTGGGGGCCATAGAGCAAGTCACAAGAAGCCAAAGCTAATGCTTGGAGGAGACCTTTCGTGTCATTACCCGTTACCAAGCACGACCATGAAACACAGGATGCACACGTGTCCAATTTGTGGCCTTGAGTTTGCAATTGGACAAGCTCTGGGAGGGCACATGAGAAAACATAGAGCTGCTACTAATAATGGTATGCTGATTCATAAGCATACCTTGCGTCTCTTGAAGAAATCCAAAGATGCTGCAAGGTTTAATTTGTGCTTGGACTTGAACTTGACGCCATCGGAGAATGATCTTATAAACCCAAGGACACCTGTTCTTAATTGTTTCATTTGA 507 0.428 MKRGREEEGILAKPNCLMLITKVGESESETKPSREGELKDGGFKCKTCNRKFSSFQALGGHRASHKKPKLMLGGDLSCHYPLPSTTMKHRMHTCPICGLEFAIGQALGGHMRKHRAATNNGMLIHKHTLRLLKKSKDAARFNLCLDLNLTPSENDLINPRTPVLNCFI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3260g00003 168 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Gabi3260g00003 168 SMART c2h2final6 43 65 IPR013087 -
Gabi3260g00003 168 SMART c2h2final6 92 114 IPR013087 -
Gabi3260g00003 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Gabi3260g00003 168 SUPERFAMILY beta-beta-alpha zinc fingers 43 114 IPR036236 -
Gabi3260g00003 168 Pfam C2H2-type zinc finger 92 116 - -
Gabi3260g00003 168 Pfam C2H2-type zinc finger 43 68 - -
Gabi3260g00003 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Gabi3260g00003 168 PANTHER ZINC FINGER PROTEIN ZAT5 6 154 - -
Gabi3260g00003 168 Gene3D Classic Zinc Finger 21 117 - -
Gabi3260g00003 168 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3260g00003 Gabi-Chr3260 38790 39487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3260g00003 1 155 C2H2 Transcription Factor Family AT2G28710 43.125 1.97e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3260g00003 zf-C2H2_6 2.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3260g00003 - - gmx:100813871 204.527