Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi325g00009 ATGGGTTCCCAAAAAAAGGATCAATCACAAAAGGGAGAGATGAGAAAAAAAGAGAGTGCTTCAATAGCCATCATTTTGAGATATGCTGATTGGTTTGATATTTTGCTCATGTTAATGGGTGCTTTGGGAGCAATAGGAGATGGAATGTCCACAAATATTTTGCTTCTATTTGCTAGCCGTATCATGAACAGCTTAGGTTATGGTAATAACCAACAAAATAATAATGGAACTTCCATGGCTGAAGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTGGCAGTTATGGGGATGGCCTTCATGGAAGGCTATTGTTGGAGCAAAACAAGTGAGAGACAGGTGTTGAGAATTCGTTACAAGTATTTGGAAGCTGTCCTAAGACAAGAAGTGGGGTTTTTTGATTCTCAAGTAGCAACTACTTCTGAAATCATTAATAGCATATCAAAGGACACTTCTCTCATACAAGAAGTTCTAAGTGAAAAGGTGCCTCTATTTTTCATGCACTTATCATCATTCATCTCTGGGGTTGCATTTGCCACCTACTTCTCTTGGAGGTTGGCTTTAGTAGCATTCCCAACACTGCTTTTACTCATAATCCCTGGCATGATTTATGGCAAATACCTTATCCATTTATCAAAGTTATCTGTCAAAGAATATGGAAAAGCAAACGCCATTGTAGAACAAGCACTAAGCTCTATTAAAACAGTTTATTCATTCACTGCGGAGAGGAGAATCTTGTGCAGATATTCAGAGATACTAGATAGAACTTCAAGGCTTGGAATCAAACAAGGCATAGCCAAGGGTCTTGCTGTAGGAAGCACTGGTCTTTCTTTTGCAATATGGGCTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGGTGCAAGTGGTGGAAGGATCTATGCAGCTGGCATTTCCTTCATAATGAGTGGACTATCCCTTGGAGTGGTACTTCCTGATTTGAAGTACTTCACGGAAGCATGTGTTGCTGCTTCACGAATATTTAACATGATTGACAGAATACCAACAATTGATGGTGAAGACACAAAAGGACTTGTGTTAGAGCACATTAGTGGACAGCTAGATTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTACTTAGTGATTTCAATCTCAAAGTGGAAGCAGGGAAAACTGTTGCTCTTGTTGGTGCAAGTGGAAGTGGCAAGTCCACTGCAATAGCATTAGTTCAAAGATTTTATGATGTAGATGAAGGTGTTGTGAGGTTTGATGGTGTAGACATAAAAAGTCTACAGTTGAAATGGATAAGAGGAAAAATGGGGCTTGTAAGTCAAGAACATGCAATGTTTGGTACATCCATAAAGGAGAATATTATGTTTGGGAAGCCTGATGCTACTATGGATGAAATTGTTGCTGCAGCAATGGCAGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGATGGTTATGAAACCAAGATTGGAGAAAGGGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATTAAAAATCCTGTAATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTGGTTCAGAATGCCCTTGATCAGGCCTCCATGGGGAGGACTACATTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCAGACCTCATAGCAGTTGTCAGTGGTGGTTGCATCATTGAAACTGGTACACACAAGGAACTCATCACAGGTCCAAATGGCCACTATGCAAAACTGGCAAAATTACAGACACAATTGAGCATTGATGACAAAGATCAAAATCCAGAACTAGGTGTTCTTTCTGCAGCTAGAAGCAGTGCAGGTAGACCAAGCACTGCCATGTCAAGCCCTGCCATCTTTCCAAATTCACCATTGCCTGATGATACTAACCCTTCTCCTATGTCTCACCCTCCACCTTCTTTTCCAAGGCTTCTTTCTCTGAATGCTCCTGAATGGAAGCAAGGTCTGATTGGAACACTCTCAGCTATAGCCTTTGGCTCAGTTCAACCCCTATATGCTTTAACCATTGGGGGTATGATTTCAGCATTTTTTGCTGAAAGCCACCAGGAAATGAAACATAGAATAAGGACTTATTCTTTAATTTTCTCTTCCCTATCCCTTGCTTCTATTACCCTCAATCTATTGCAACACTACAATTTTGCTTGTATGGGAGCCAAGTTAACAAAAAGGATAAGGTTGCACATGCTGGAGAAGATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTTAAGTCCCTCGTTGCAGACCGTCTCTCTTTACTAGTTCAAACCACTTCTTCTGTCACCATTGCAATGATCATAGGACTTGCTGTGGCTTGGAAGCTTGCTCTTGTTATGATAGCAGTGCAGCCACTTACAATCCTTTGCTTTTATACACGAAAAGTGTTGCTCTCTACACTTTCAACCAAGTTTGTTAAGGCTCAGAATCAAAGTACACAAATTGCAGTGGAAGCAGTTTATAATCATAGAATTGTAACTTCATTTGGAAGCATCACAAAAGTTCTAAAACTATTTGATGAGGCTCAAGAGGAACCAAGGAAGGAAGCAAGGAAGAAATCTTGGCTAGCTGGCATTGGAATGGGTTCTGCTCAGTGCCTAACATTCATGTCATGGGCTTTGGATTTCTGGTATGGGGGTACATTGGTTGAAAAGGGAGAAATATCAGCAGGGGATGTGTTCAAAACATTTTTTGTATTGGTAAGCACTGGTAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCTAAAAGCTCAACAGCAGTGGCATCTGTATTTCAAATTCTTGACAGACAATCACTAATTCCCAAGGCTGGAGATAGCAACAATGGCACTAAGTTGGAAAAGATGAGTGGAAAGATAGAGTTGAAGAATGTTGATTTTGCCTATCCAAGCAGGGCTGGGACCCCAGTGTTGCACAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGGCTGGTTGGTAAAAGTGGATGTGGAAAATCAACAGTGATTGCCTTAATTCAAAGATTCTATGATGTTGAGAGAGGTTCAGTGAAAGTGGATAACATGGACATAAGGGAATTAGACATTCACTGGTACAGGCAACACACAGCACTTGTTAGCCAAGAACCTGTTATATATTCTGGTAGCTTACGTGACAACATTTTGTTTGGGAAGCAAGATGCAACAGAGAATGAAGTGGTTGAGGCTGCAAGAGCTGCAAATGCTCATGAATTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTACAGTTGTCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTAGAAACCCAACAATATTACTGCTAGATGAAGCAACAAGTGCTCTGGATGTGCAATCAGAACAAGTGGTGCAAGAAGCACTTGATAGGATTATGGTAGGAAGAACTACCATTGTTGTGGCACATAGGCTTAACACCATCAAAGAACTTGACTCAATTGCTTATGTGTCAGATGGCAAGGTTCTGGAACAAGGAACCTATGCTCACCTTAGGCACAAGAGAGGTGCCTTCTTTAACCTTTCAAGTCATCAAATCCAAACTTAG 3720 0.4102 MGSQKKDQSQKGEMRKKESASIAIILRYADWFDILLMLMGALGAIGDGMSTNILLLFASRIMNSLGYGNNQQNNNGTSMAEVEKCSLYFVYLGLAVMGMAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQVATTSEIINSISKDTSLIQEVLSEKVPLFFMHLSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIHLSKLSVKEYGKANAIVEQALSSIKTVYSFTAERRILCRYSEILDRTSRLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGASGGRIYAAGISFIMSGLSLGVVLPDLKYFTEACVAASRIFNMIDRIPTIDGEDTKGLVLEHISGQLDFEHVKFTYPSRPDMVVLSDFNLKVEAGKTVALVGASGSGKSTAIALVQRFYDVDEGVVRFDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKPDATMDEIVAAAMAANAHNFIRQLPDGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGCIIETGTHKELITGPNGHYAKLAKLQTQLSIDDKDQNPELGVLSAARSSAGRPSTAMSSPAIFPNSPLPDDTNPSPMSHPPPSFPRLLSLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAESHQEMKHRIRTYSLIFSSLSLASITLNLLQHYNFACMGAKLTKRIRLHMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSSVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLKLFDEAQEEPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKGEISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFQILDRQSLIPKAGDSNNGTKLEKMSGKIELKNVDFAYPSRAGTPVLHKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKVDNMDIRELDIHWYRQHTALVSQEPVIYSGSLRDNILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSDGKVLEQGTYAHLRHKRGAFFNLSSHQIQT 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi325g00009 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 602 IPR027417 -
Gabi325g00009 1239 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 980 - -
Gabi325g00009 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 962 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi325g00009 1239 Gene3D - 362 615 IPR027417 -
Gabi325g00009 1239 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Gabi325g00009 1239 FunFam ABC transporter B family member 4 354 610 - -
Gabi325g00009 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1236 IPR027417 -
Gabi325g00009 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Gabi325g00009 1239 Pfam ABC transporter transmembrane region 41 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi325g00009 1239 Pfam ABC transporter transmembrane region 676 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi325g00009 1239 PANTHER ABC TRANSPORTER B FAMILY 6 687 IPR039421 -
Gabi325g00009 1239 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 337 - -
Gabi325g00009 1239 SUPERFAMILY ABC transporter transmembrane region 657 975 IPR036640 GO:0005524|GO:0016020
Gabi325g00009 1239 Gene3D ABC transporter type 1, transmembrane domain 87 894 IPR036640 GO:0005524|GO:0016020
Gabi325g00009 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Gabi325g00009 1239 FunFam Putative ABC transporter B family member 8 641 984 - -
Gabi325g00009 1239 FunFam ABC transporter B family member 1 24 361 - -
Gabi325g00009 1239 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Gabi325g00009 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi325g00009 1239 SUPERFAMILY ABC transporter transmembrane region 25 348 IPR036640 GO:0005524|GO:0016020
Gabi325g00009 1239 MobiDBLite consensus disorder prediction 643 659 - -
Gabi325g00009 1239 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Gabi325g00009 1239 CDD ABC_MTABC3_MDL1_MDL2 365 602 - -
Gabi325g00009 1239 Gene3D ABC transporter type 1, transmembrane domain 895 988 IPR036640 GO:0005524|GO:0016020
Gabi325g00009 1239 Gene3D - 989 1236 IPR027417 -
Gabi325g00009 1239 FunFam ABC multidrug transporter SitT 989 1237 - -
Gabi325g00009 1239 MobiDBLite consensus disorder prediction 621 659 - -
Gabi325g00009 1239 SMART AAA_5 391 583 IPR003593 GO:0016887
Gabi325g00009 1239 SMART AAA_5 1026 1218 IPR003593 GO:0016887
Gabi325g00009 1239 Pfam ABC transporter 1019 1166 IPR003439 GO:0005524
Gabi325g00009 1239 MobiDBLite consensus disorder prediction 624 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi325g00009 Gabi-Chr325 68652 76862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi325g00009 89 602 Calmodulin-binding Proteins AT2G36910 36.031 4.43e-94 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi325g00009 K05658 - gmx:100801088 2112.04