Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3259g00025 ATGCGTGTGAGGATATATGCAAATGCCAATGCAGATGTACGCTTTTCTTACAAGAAAGAAAGCAAGGAGGAAGAGGAAACATGTGGTGTTGATGTCTCCCACAGAAGATGCAATAATCTCTTACCGTGGTCAAACAATTTTGTTTTTGCCTCTGTTTGTACTTGGCTTTCAGTCTCCATGAGTTCACAGCATTTCAGCAATGGGGGTGAAGGTTTCAATGGAGATATGAGTTTTTTCCATTCAGCTCATGTCCCTTCTTCTCTTCTCCTGAGTTCCCAAGCTCCTCCTTTGTCTAAGACTCTAGCGGTTATGGGTGATGGTTGTGGGGTAGAGGGTCCAAAGCCTGAGATGGGGCTTCAGATTTTGAGCCCCTCAATGTTCCAGCCCCAGGAGAGCAGGGGAACAAAGAGAATCAACGATGAAAGAGATGGGTACTTTGGGGTTGATAACAAGAACTTGTCTTTGAAACTTGGGGATGAAGTTGAAGCTAAGAGTTCTGGTGCTGGAAAAAATGGTTATTCTAAGCTCTGTGCTAGAGGTCACTGGAGGCCAGCTGAAGATGCAAAACTTAAGGAGCTTGTTGCTCAGTATGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTAGAAGGAAGATCAGGGAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTGGATCCTAGAATCAACAAAAGGGCTTTTTCTGATGAGGAAGAGGAGAGGCTTTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCCATGATTGCTAGACTCTTTCCTGGGAGGACAGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGAAGGTACAGGGAACAATCTAGTGTGTATAGAAGGAGAAAGCCAGCTGTTGAAAATGAAGCAACTGGTTTAAAATTGACTCTGTCAAACAATGCAGCCAGTGAATCAACCATCTCAAGCACCATGGATGAATCTGCTTCAACTTGCACTAACCTCTCCCTTACTCCTTCTTCAGCCAAAATAACACCTAGACTTTTTGATAAACTGGGTCCAGTTTTGAATCACCAAGTGCATGGATTGCTAATGGGGGTGGCAACTGGGAATGTGAGTTTTGACAAATTGTTTGGTGCTTGGAATGGAACATATAAGCTTGAATCCATGGGAATGCTCATTGGTGTGGACCAGTCCAATTTCTCAGATTCAAACTCAGAAGTTTCAGTGTCTGAGTCAGTTGCCACCAATAGGTCCAATCTCTCAATTTTTGGTGAAAGTGAAAACGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGGGTAGGAGCTACATAG 1326 0.4299 MRVRIYANANADVRFSYKKESKEEEETCGVDVSHRRCNNLLPWSNNFVFASVCTWLSVSMSSQHFSNGGEGFNGDMSFFHSAHVPSSLLLSSQAPPLSKTLAVMGDGCGVEGPKPEMGLQILSPSMFQPQESRGTKRINDERDGYFGVDNKNLSLKLGDEVEAKSSGAGKNGYSKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINKRAFSDEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRYREQSSVYRRRKPAVENEATGLKLTLSNNAASESTISSTMDESASTCTNLSLTPSSAKITPRLFDKLGPVLNHQVHGLLMGVATGNVSFDKLFGAWNGTYKLESMGMLIGVDQSNFSDSNSEVSVSESVATNRSNLSIFGESENVGDKINMPFIDFLGVGAT 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3259g00025 441 ProSiteProfiles Myb-like domain profile. 179 225 IPR001005 -
Gabi3259g00025 441 FunFam MYB transcription factor 179 230 - -
Gabi3259g00025 441 CDD SANT 233 273 IPR001005 -
Gabi3259g00025 441 Gene3D - 232 300 - -
Gabi3259g00025 441 PANTHER MYB PROTEIN-RELATED 165 320 - -
Gabi3259g00025 441 Pfam Myb-like DNA-binding domain 182 242 - -
Gabi3259g00025 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 280 IPR017930 -
Gabi3259g00025 441 FunFam MYB transcription factor 232 302 - -
Gabi3259g00025 441 SUPERFAMILY Homeodomain-like 179 272 IPR009057 -
Gabi3259g00025 441 Gene3D - 179 230 - -
Gabi3259g00025 441 CDD SANT 182 223 IPR001005 -
Gabi3259g00025 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 225 IPR017930 -
Gabi3259g00025 441 SMART sant 178 227 IPR001005 -
Gabi3259g00025 441 SMART sant 230 278 IPR001005 -
Gabi3259g00025 441 ProSiteProfiles Myb-like domain profile. 226 276 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3259g00025 Gabi-Chr3259 322733 327012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3259g00025 169 344 MYB Transcription Factor Family AT5G17800 61.413 4.52e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3259g00025 Myb_DNA-bind_6 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3259g00025 K09422 - gmx:100791795 494.197