Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3259g00014 ATGGGGAGGCCTCCTTGTTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAAGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGATGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAGGAAGGAATGATCATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCGCAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTCCAAGCAGCCTTAGAGCCTCCTCACCAAGCATCAGATTCCACAACCACTGGTCAGTATTTATCAAAGAGCTTCAATGACAGAAGAAGTTTAGATATCAGCAACGACCATGCCTCATCCACTAGGCTAAGTCAATCTCAGTCCTCAACATATGCCTCAAGCACTGAGAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCAAAGCCACTCAAAGGAACACAAGATGAAGAGCTTCAAAGCAATGACAGCTTTGAAAACACTAAGCTAGTGAAATCTGCATCAGTGCCTGCTTTACACCTTCAACTTCAGCACAAAACCAAAGATGAACAAGAGGGTGGAGATATAGTGTCCCATGAAGAGTTTGATTCTATTTTGTCTTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACTTGTGATTCTATGCCTGAAAAGTGTTCTGAAGCTTCTGTTCCTGACTTTGCTGACAAGGTTGATCACGATATAGCAGAGAGTCATAGGCAAAAAACTGAAAACTGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTTTTGGATGAAAACGTTGGTCAAGGGGATGATATGATGGAATTGTCTCCTATGTTCTAA 975 0.4256 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALEPPHQASDSTTTGQYLSKSFNDRRSLDISNDHASSTRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKGTQDEELQSNDSFENTKLVKSASVPALHLQLQHKTKDEQEGGDIVSHEEFDSILSFENLNNAAWDKSTCDSMPEKCSEASVPDFADKVDHDIAESHRQKTENCAPPLSFLEKWLLDENVGQGDDMMELSPMF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3259g00014 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 214 - -
Gabi3259g00014 324 CDD SANT 69 112 IPR001005 -
Gabi3259g00014 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi3259g00014 324 Gene3D - 69 165 - -
Gabi3259g00014 324 CDD SANT 16 61 IPR001005 -
Gabi3259g00014 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi3259g00014 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3259g00014 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3259g00014 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3259g00014 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3259g00014 324 SMART sant 66 114 IPR001005 -
Gabi3259g00014 324 SMART sant 13 63 IPR001005 -
Gabi3259g00014 324 Gene3D - 13 66 - -
Gabi3259g00014 324 FunFam Transcription factor MYB60 68 138 - -
Gabi3259g00014 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3259g00014 324 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3259g00014 Gabi-Chr3259 168035 169857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3259g00014 1 135 MYB Transcription Factor Family AT5G62470 81.481 1.88e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3259g00014 Myb_DNA-binding 1.6e-15 CL0123