Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3259g00007 ATGGGAAGCAGAAAGGAAGAAGAGAGGAATGAGAAAATCATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGCATCAACTGCAATAGTATGGGTCCGCAATATGTTTGTACGAATTTTTGGTCCTTCGTTTGCGTGACATGCAGTGGAATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACTGCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGCAATGTTGATAAAATAAGAGAGTTTATAAGGAATGTATATGTGGATCGAGGATACGCTGCAGCAAGGTCTTCTGACAAGCCTCCAAGAGATGTGCAGAGCCCTAGAATCCATGAAGATGATACAAGGCGTGCTAGTTCTTATCACTCGTTTTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGAAGATATGGAAAACAAGCAGCTGCACTGACCAGGAAACCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATGAGTAGTATTATCTATAGTCCTGGTCGTTTCAGTGATCAAGTATATGGTGACAGATTTGCAAATGAGGGATCTGGTCCCAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGCGAACAATTCAAATCTGATGTTCACTCTCCCAATTCTGAAAAGGATATTGGGTTTAATAGTCCACCCTATCAGCGTTCTGGTGCCCGTTCAAGTGAAGATGTATGGTCTCATGCAAGAAGTACATCTCTGGAAACAAATTCCAAGAGAGAAGCAGATGGAATTCATCATCCCCAGAGAACTACTTCACTAGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTATCCAAGCTTCTGGATCTCTTCAGAATAAAGTGTCTTGTGTTCCACAGCAATCTGGTCTGGGAGGTTCTGTTAGTTCAGATCTTTCCAAGGCACCGGTGGCACATAAACCATCATCTTCATCAGCTTCATCTGTTGATCTTTTTCAGTTGCCAGCTGCACCTTTTAAGGCTTCAGCAGTGGATCTGTTTCAGACATCTGTTTTATCAGCTGTTCCATCTATCAATGAGATTCAACCCACGCAAACATCCCAACCATCATCTGTTGACTTCTTTGTTGATGCTTTTCAGCATCCATCTGCTTCAGCCTCAAATGAGAAGTCAGTAGAGTTATCGGTCCCCGAAAATGAACGATGGGCAACATTTGACACACCTCAACACACAACATCTACTGCACGAGTTGAAATTCCAGCAACAGTATCTTCAACTGCTGACTCTTTGCAGGAAATATTTGATCCATTTTTAATCTTAAATGCAAATATGCAATGGCCATCTTTTGAAACATCTAGTGTTAGTGTTCCTTCTTCAGTTAAATCTAATATATGGCATGATGGTGTGCAAAATGGAGAAGAACAAGTTTCTGTTACAGCCACAAAGAGTCAACCATGGAATGCATTTGAAGATTCTGGCACTGCTATTCCTGTGGATGCCCTTAATCAAGGATTACAAGTGCACAATCTTCCGTCAACTGATGATCAGTTTTTGGAAATACAAGCTTCTGAGCTATCCAATAAAGGTGGGATGCAAGGCATTGCCCCTGTTAACGGGTTTGATGATCATGATCTCTCATCACATTTTGTTAGTGGCTTACCATATCCTCCATCTGCATATCCTCAGATGGGAGGGGTTCAACCTAATGAAATCAACCGTAAATCAACTAATCCATTTGATTATCCCTATGATTCTGATGTAGAGCACAATAATATGTTTCCATTGCAATTCCTTGATATCAGCTCTTTGCAAGCTGCTCTGCCGGATTCCCAGTTACCACCCACCTTCCACAGTGGTATTGCTGAACCATGGCTCCCTCAAAATTCAGTGAACCCTTATATTTCCTCTGCAGGACAAGGTGGTTTCACACTCATGGCTGCACAACCACCAAGTTCCCAAATACCGAATGTCCAGACACAGGGACCAGTTGCTTCTTTTGGGGGTAATCCTTTTGCATAG 2112 0.4214 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSMGPQYVCTNFWSFVCVTCSGIHREFTHRVKSVSMAKFTAQEVDALQNGGNQRAREIYLKNWDFQRQRLPDSSNVDKIREFIRNVYVDRGYAAARSSDKPPRDVQSPRIHEDDTRRASSYHSFSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKMSSIIYSPGRFSDQVYGDRFANEGSGPRISDFSVSSGGEQFKSDVHSPNSEKDIGFNSPPYQRSGARSSEDVWSHARSTSLETNSKREADGIHHPQRTTSLGSTDSNLSSLRSYNSGGLVDFFSEPIQASGSLQNKVSCVPQQSGLGGSVSSDLSKAPVAHKPSSSSASSVDLFQLPAAPFKASAVDLFQTSVLSAVPSINEIQPTQTSQPSSVDFFVDAFQHPSASASNEKSVELSVPENERWATFDTPQHTTSTARVEIPATVSSTADSLQEIFDPFLILNANMQWPSFETSSVSVPSSVKSNIWHDGVQNGEEQVSVTATKSQPWNAFEDSGTAIPVDALNQGLQVHNLPSTDDQFLEIQASELSNKGGMQGIAPVNGFDDHDLSSHFVSGLPYPPSAYPQMGGVQPNEINRKSTNPFDYPYDSDVEHNNMFPLQFLDISSLQAALPDSQLPPTFHSGIAEPWLPQNSVNPYISSAGQGGFTLMAAQPPSSQIPNVQTQGPVASFGGNPFA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 131 148 - -
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 680 703 - -
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 211 297 - -
Gabi3259g00007 703 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Gabi3259g00007 703 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Gabi3259g00007 703 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Gabi3259g00007 703 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Gabi3259g00007 703 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 123 161 - -
Gabi3259g00007 703 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Gabi3259g00007 703 CDD ArfGap_AGFG 11 119 - -
Gabi3259g00007 703 PANTHER ARFGAP/RECO-RELATED 1 703 IPR044820 GO:0005096
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 333 356 - -
Gabi3259g00007 703 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Gabi3259g00007 703 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Gabi3259g00007 703 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 217 269 - -
Gabi3259g00007 703 MobiDBLite consensus disorder prediction 680 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3259g00007 Gabi-Chr3259 76790 86269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3259g00007 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 8.68e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3259g00007 K15044 - gmx:100817495 1001.12