Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3259g00006 ATGGGAAGCAGAAAGGAAGAAGAGAGGAATGAGAAAATCATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGCATCAACTGCAATAGTATGGGTCCGCAATATGTTTGTACGAATTTTTGGTCCTTCGTTTGCGTGACATGCAGTGGAATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACTGCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGCAATGTTGATAAAATAAGAGAGTTTATAAGGAATGTATATGTGGATCGAGGATACGCTGCAGCAAGGTCTTCTGACAAGCCTCCAAGAGATGTGCAGAGCCCTAGAATCCATGAAGATGATACAAGGCGTGCTAGTTCTTATCACTCGTTTTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGAAGATATGGAAAACAAGCAGCTGCACTGACCAGGAAACCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATGAGTAGTATTATCTATAGTCCTGGTCGTTTCAGTGATCAAGTATATGGTGACAGATTTGCAAATGAGGGATCTGGTCCCAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGCGAACAATTCAAATCTGATGTTCACTCTCCCAATTCTGAAAAGGATATTGGGTTTAATAGTCCACCCTATCAGCGTTCTGGTGCCCGTTCAAGTGAAGATGTATGGTCTCATGCAAGAAGTACATCTCTGGAAACAAATTCCAAGAGAGAAGCAGATGGAATTCATCATCCCCAGAGAACTACTTCACTAGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTATCCAAGCTTCTGGATCTCTTCAGAATAAAGTGTCTTGTGTTCCACAGCAATCTGGTCTGGGAGGTTCTGTTAGTTCAGATCTTTCCAAGGCACCGGTGGCACATAAACCATCATCTTCATCAGCTTCATCTGTTGATCTTTTTCAGTTGCCAGCTGCACCTTTTAAGGCTTCAGCAGTGGATCTGTTTCAGACATCTGTTTTATCAGCTGTTCCATCTATCAATGAGATTCAACCCACGCAAACATCCCAACCATCATCTGTTGACTTCTTTGTTGATGCTTTTCAGCATCCATCTGCTTCAGCCTCAAATGAGAAGTCAGTAGAGTTATCGGTCCCCGAAAATGAACGATGGGCAACATTTGACACACCTCAACACACAACATCTACTGCACGAGTTGAAATTCCAGCAACAGTATCTTCAACTGCTGACTCTTTGCAGGAAATATTTGATCCATTTTTAATCTTAAATGCAAATATGCAATGGCCATCTTTTGAAACATCTAGTGTTAGTGTTCCTTCTTCAGTTAAATCTAATATATGGCATGATGGTGTGCAAAATGGAGAAGAACAAGTTTCTGTTACAGCCACAAAGAGTCAAACTGAACAGCCATGGAATGCATTTGAAGATTCTGGCACTGCTATTCCTGTGGATGCCCTTAATCAAGGATTACAAGTGCACAATCTTCCGTCAACTGATGATCAGTTTTTGGAAATACAAGCTTCTGAGCTATCCAATAAAGGTGGGATGCAAGGCATTGCCCCTGTTAACGGGTTTGATGATCATGATCTCTCATCACATTTTGTTAGTGGCTTACCATATCCTCCATCTGCATATCCTCAGATGGGAGGGGTTCAACCTAATGAAATCAACCGTAAATCAACTAATCCATTTGATTATCCCTATGATTCTGATGTAGAGCACAATAATATGTTTCCATTGCAATTCCTTGATATCAGCTCTTTGCAAGCTGCTCTGCCGGATTCCCAGTTACCACCCACCTTCCACAGTGGTATTGCTGAACCATGGCTCCCTCAAAATTCAGTGAACCCTTATATTTCCTCTGCAGGACAAGGTGGTTTCACACTCATGGCTGCACAACCACCAAGTTCCCAAATACCGAATGTCCAGACACAGGGACCAGTTGCTTCTTTTGGGGGTAATCCTTTTGCATAG 2121 0.4215 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSMGPQYVCTNFWSFVCVTCSGIHREFTHRVKSVSMAKFTAQEVDALQNGGNQRAREIYLKNWDFQRQRLPDSSNVDKIREFIRNVYVDRGYAAARSSDKPPRDVQSPRIHEDDTRRASSYHSFSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKMSSIIYSPGRFSDQVYGDRFANEGSGPRISDFSVSSGGEQFKSDVHSPNSEKDIGFNSPPYQRSGARSSEDVWSHARSTSLETNSKREADGIHHPQRTTSLGSTDSNLSSLRSYNSGGLVDFFSEPIQASGSLQNKVSCVPQQSGLGGSVSSDLSKAPVAHKPSSSSASSVDLFQLPAAPFKASAVDLFQTSVLSAVPSINEIQPTQTSQPSSVDFFVDAFQHPSASASNEKSVELSVPENERWATFDTPQHTTSTARVEIPATVSSTADSLQEIFDPFLILNANMQWPSFETSSVSVPSSVKSNIWHDGVQNGEEQVSVTATKSQTEQPWNAFEDSGTAIPVDALNQGLQVHNLPSTDDQFLEIQASELSNKGGMQGIAPVNGFDDHDLSSHFVSGLPYPPSAYPQMGGVQPNEINRKSTNPFDYPYDSDVEHNNMFPLQFLDISSLQAALPDSQLPPTFHSGIAEPWLPQNSVNPYISSAGQGGFTLMAAQPPSSQIPNVQTQGPVASFGGNPFA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 131 148 - -
Gabi3259g00006 706 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Gabi3259g00006 706 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Gabi3259g00006 706 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 211 297 - -
Gabi3259g00006 706 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Gabi3259g00006 706 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Gabi3259g00006 706 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Gabi3259g00006 706 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Gabi3259g00006 706 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Gabi3259g00006 706 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 123 161 - -
Gabi3259g00006 706 PANTHER ARFGAP/RECO-RELATED 1 706 IPR044820 GO:0005096
Gabi3259g00006 706 CDD ArfGap_AGFG 11 119 - -
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 683 699 - -
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 683 706 - -
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 333 356 - -
Gabi3259g00006 706 MobiDBLite consensus disorder prediction 217 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3259g00006 Gabi-Chr3259 76790 86269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3259g00006 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 8.66e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3259g00006 K15044 - gmx:100817495 996.497