Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3259g00001 ATGGACCCTCAGACTGAGGATAAGTTGTTCTTAAGGTGCTCAGATTCCTTCGAAATTCCAACGAGAGGAAAGCGCAAATATGGTTCAAAGAAGAGAAAGGTTCAAGAAGGCATTTTGGCAAGTTCAAAGAAGAGAAAGGTTCAAGAAGGCAGAGGAGACATTTTGCCAAGTTTAAAGAATACTAAACTTCCTTCCAGGAAAGTACACGAGCCAAAGAAGAGTCTTTCTGGCTTGAACAAGAAAAGAAAATTGGAAGACAATATCAGGATTAACAATTTGGAAGAAGATGAGGAAGTTCTTTTTCTTCCAAGGACAAAGTCAAGAAGGCAAACTAGAAATATGGACAATATGAAGGATACTGAACAAAATTCCAAAATATGTCATCAATGCATGAAAAAGGAAAGAGCAGCATTTGTACCATGTACTAAATGTCAAAAAATGTACTGTTTGTGGTGCATCAAGAACTGGTATCCCGATATGAAAACAGAAGATATTGCAGCGAGTTGCCCCTTTTGCAGGAAAAATTGCAACTGCAATGTCTGCTTACGGTCAAAGGGAATGATTAAGACATCTAACGGGAAGTTCACAGATTGTGAAAAGGTTCGGTATTTGCAATACATGACTAATTCACTTCTTCCGTTTGTGGAACAAATTCGTGAAGAACAAAGTCATGAGCATGAGATTGAAGCCAAGATACAAGGAAAATCATGTTCTGAGATTAAGATACCTCAAAGTACTTGTAGTGACGATGAACGTATCTATTGTGATCATTGTGCCACGTCTATTGTTGATCTTTATAGAAGCTGCCCCAAGTGTTCGTTTGAAATCTGTCTTACTTGCTGTCAAGAAATACGAAATAGAAGTATTTCACCCCGGCCTGAACTGAAGTTTGAATATGTTAATAAGGGCATTGAGTACATGCATGGTGGTCCTCCTCAACCAGTATATTGTGATTTAGGGACTTCAGAGGGTACTATTGAGATATATACTGATTGGAATGCTAACAGTGATGGAAGTATTAGATGTGCTCCAAAAGAAATGGGGGGTTGTGGTGACTGTGTATTGGAGCTAAAGTGCATACTTCCAAATGGAACAATTTCTAATTTGGAAGCCAAAACTCGTAACATGCTGGAGAAATTTTGCAAAATTGAGCACAAAACTCTTCAGAAAGAAGCAGTATTAAGCAGCAATTCTACGGTAAGAGCTGCTTTTAGAGATGGCACGAATGATAATAACATATACTGTCCAGTGTCAAGTGACTTGTCAGAAGAAGGGCTATTTCTCTTCCAACAACATTGGATTAAAGGTGAACCAATCATAGTTCGGGATGTTCTTAAACAAGGGACAGGTCTGAGTTGGGAGCCAAATATCACTTGGCGAGCATTATGTGAAAATTTGGTTTCAGGGAACAGCTCAAATGCGTCAAAAGTGAAGGCCATTGATTGCCTGTCTTGTTGTGAGGTAGAAATTCTCAGTCGTGATTTCTTTAAAGGTTATACGGAAGGAAGAACATATATGAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGACAAGTTTGAAGATCTTTTGCCCCGGCATTGTGATGAATTTATCTGTTGTTTACCATTTCAAGAGTACAGTGATCCTCGAGCTGGAATCCTCAACCTTGCTGCAAAGTTACCAGCTCATGTCCTAAAGCCTGACATGGGTCCTAAAACCTATATTGCTTATGGGACTAAAGAAGAACTTGGCAGAGGGGACTCTGTAACAAAGCTTCACTGTGACATGTCTGATGCGGTGAATATTTTGACACATACAGCTGAGGTTTCATTAACTGATGAACAACAACCTGTTATTTCAAAATTAAAGAAAGCACACAAGGCCCAAGATGAGAAAGAGTGTCATGCTCAGGTTTCTGAATGCCTGAGGAAGTGCCATAAAATCAATGAAAAGATATTTCCAAATGATGTGCCTGCTATCTCTAAAGAAACCACAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGGGAGGATACTGAAAAGTTAGAAGCATATCTACGAAAACATTCTAAAGAATTTAGACATACTTATTGTTGTCCAGTTCAAAAGGTTGTCCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTGAAGGAAGAATTTGGTGTAGAACCTTGGACGTTTGAGCAGAAACTTGGAGAGGCAGTATTTATACCTGCTGGATGTCCACACCAAGTTAGGAATCTCAAGTCATGCACTAAAGTTGCTTCAGATTTTGTGTCTCCTGAGAATATTCATATGTGCTTGCGATTAAAGGATGAATTCCGACGTCTTCCTAGGAATCACAAGGCGAGAGAAGATAAGCTAGAGATAAAGAAGATGATCGTGTGTGCTGTAGATCAAATAGTCAAGGAATTAGAAGCATTGGTGGAGTGTTCTTGA 2457 0.3948 MDPQTEDKLFLRCSDSFEIPTRGKRKYGSKKRKVQEGILASSKKRKVQEGRGDILPSLKNTKLPSRKVHEPKKSLSGLNKKRKLEDNIRINNLEEDEEVLFLPRTKSRRQTRNMDNMKDTEQNSKICHQCMKKERAAFVPCTKCQKMYCLWCIKNWYPDMKTEDIAASCPFCRKNCNCNVCLRSKGMIKTSNGKFTDCEKVRYLQYMTNSLLPFVEQIREEQSHEHEIEAKIQGKSCSEIKIPQSTCSDDERIYCDHCATSIVDLYRSCPKCSFEICLTCCQEIRNRSISPRPELKFEYVNKGIEYMHGGPPQPVYCDLGTSEGTIEIYTDWNANSDGSIRCAPKEMGGCGDCVLELKCILPNGTISNLEAKTRNMLEKFCKIEHKTLQKEAVLSSNSTVRAAFRDGTNDNNIYCPVSSDLSEEGLFLFQQHWIKGEPIIVRDVLKQGTGLSWEPNITWRALCENLVSGNSSNASKVKAIDCLSCCEVEILSRDFFKGYTEGRTYMNLWPEMLKLKDWPPSDKFEDLLPRHCDEFICCLPFQEYSDPRAGILNLAAKLPAHVLKPDMGPKTYIAYGTKEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQQPVISKLKKAHKAQDEKECHAQVSECLRKCHKINEKIFPNDVPAISKETTETGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCCPVQKVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVASDFVSPENIHMCLRLKDEFRRLPRNHKAREDKLEIKKMIVCAVDQIVKELEALVECS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3259g00001 818 SUPERFAMILY Clavaminate synthase-like 427 811 - -
Gabi3259g00001 818 ProSiteProfiles Zinc finger RING-type profile. 127 173 IPR001841 -
Gabi3259g00001 818 Pfam JmjC domain, hydroxylase 666 764 IPR003347 -
Gabi3259g00001 818 SMART cupin_9 528 781 IPR003347 -
Gabi3259g00001 818 Gene3D Cupin 409 790 - -
Gabi3259g00001 818 ProSiteProfiles JmjC domain profile. 547 781 IPR003347 -
Gabi3259g00001 818 MobiDBLite consensus disorder prediction 21 55 - -
Gabi3259g00001 818 CDD cupin_RmlC-like 705 753 - -
Gabi3259g00001 818 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 121 191 IPR018866 -
Gabi3259g00001 818 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 57 815 IPR045109 GO:0032454|GO:0033169
Gabi3259g00001 818 MobiDBLite consensus disorder prediction 32 52 - -
Gabi3259g00001 818 FunFam Transcription factor jumonji domain-containing protein 410 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3259g00001 Gabi-Chr3259 9337 13459 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi3259g00001 JmjC 4.9e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3259g00001 K15601 K21989 gmx:100801772 1151.73